Update main OWL extraction test

tests/main_tests/test_data/amrDocuments/dev/test/test-02.stog.amr.ttl

+@prefix ns1: <http://amr.isi.edu/rdf/core-amr#> .
+@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+
+ns1:Concept a rdfs:Class ;
+    rdfs:label "AMR-Concept" .
+
+ns1:Role a rdfs:Class ;
+    rdfs:label "AMR-Role" .
+
+<http://amr.isi.edu/amr_data/test-02#root01> a ns1:AMR ;
+    ns1:has-id "test-02" ;
+    ns1:has-sentence "Earth is a planet." ;
+    ns1:root <http://amr.isi.edu/amr_data/test-02#p> .
+
+<http://amr.isi.edu/frames/ld/v1.2.2/FrameRole> a ns1:Role ;
+    rdfs:label "AMR-PropBank-Role" .
+
+ns1:Frame a ns1:Concept ;
+    rdfs:label "AMR-PropBank-Frame" .
+
+<http://amr.isi.edu/amr_data/test-02#p> a <http://amr.isi.edu/entity-types#planet> ;
+    rdfs:label "Earth" .
+
+<http://amr.isi.edu/entity-types#planet> a ns1:NamedEntity .
+
+ns1:NamedEntity a ns1:Concept ;
+    rdfs:label "AMR-EntityType",
+        "AMR-Term" .
+

tests/main_tests/test_main_owl_extraction.py

@@ -54,16 +54,17 @@ test_data_dir = f'{INPUT_DIR_PATH}amrDocuments/'
 # amrld_dir_path = f'{test_data_dir}dev/empty-dir/'
 # amrld_dir_path = f'{test_data_dir}dev/test/'
 # onto_prefix = f'SimpleTest'
+# base_output_name = f'SimpleTest'
 
-uuid_num = '01'
-amrld_dir_path = f'{test_data_dir}dev/solar-system-{uuid_num}/'
-amrld_file_path = f'{amrld_dir_path}SSC-{uuid_num}-01.stog.amr.ttl'
-base_output_name = f'SolarSystemDev{uuid_num}'
-onto_prefix = f"https://tenet.tetras-libre.fr/demo/{uuid_num}/"
+# uuid_num = '01'
+# amrld_dir_path = f'{test_data_dir}dev/solar-system-{uuid_num}/'
+# amrld_file_path = f'{amrld_dir_path}SSC-{uuid_num}-01.stog.amr.ttl'
+# base_output_name = f'SolarSystemDev{uuid_num}'
+# onto_prefix = f"https://tenet.tetras-libre.fr/demo/{uuid_num}/"
 
-# amrld_dir_path = f'{test_data_dir}samples/solar-system/'
-# onto_prefix = 'SolarSystemSample'
-# base_output_name = f'SolarSystemSample'
+amrld_dir_path = f'{test_data_dir}samples/solar-system/'
+onto_prefix = 'SolarSystemSample'
+base_output_name = f'SolarSystemSample'
 
 # uuid_num = '03'
 # amrld_dir_path = f'{test_data_dir}dev/cc-sentence-examples/'

tests/main_tests/test_owl_output/SimpleTest-20230622/SimpleTest_factoid.ttl

+@prefix ns1: <https://tenet.tetras-libre.fr/base-ontology#> .
+@prefix owl: <http://www.w3.org/2002/07/owl#> .
+@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+
+<https://tenet.tetras-libre.fr/extract-result#Earth> a owl:Individual,
+        <https://tenet.tetras-libre.fr/extract-result#planet> ;
+    rdfs:label "Earth" ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#star> a owl:Class ;
+    rdfs:label "star" ;
+    rdfs:subClassOf ns1:Undetermined_Thing ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#sun> a owl:Class ;
+    rdfs:label "sun" ;
+    rdfs:subClassOf ns1:Undetermined_Thing ;
+    ns1:fromStructure "unknown" .
+

tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-1/SimpleTest_factoid.ttl

+@prefix ns1: <https://tenet.tetras-libre.fr/base-ontology#> .
+@prefix owl: <http://www.w3.org/2002/07/owl#> .
+@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+
+<https://tenet.tetras-libre.fr/extract-result#Earth> a owl:Individual,
+        <https://tenet.tetras-libre.fr/extract-result#planet> ;
+    rdfs:label "Earth" ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#star> a owl:Class ;
+    rdfs:label "star" ;
+    rdfs:subClassOf ns1:Undetermined_Thing ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#sun> a owl:Class ;
+    rdfs:label "sun" ;
+    rdfs:subClassOf ns1:Undetermined_Thing ;
+    ns1:fromStructure "unknown" .
+

tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-2/SimpleTest_factoid.ttl

+@prefix ns1: <https://tenet.tetras-libre.fr/base-ontology#> .
+@prefix owl: <http://www.w3.org/2002/07/owl#> .
+@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+
+<https://tenet.tetras-libre.fr/extract-result#Earth> a owl:Individual,
+        <https://tenet.tetras-libre.fr/extract-result#planet> ;
+    rdfs:label "Earth" ;
+    ns1:fromStructure "unknown" .
+

tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/tenet.log

+- INFO - [TENET] Extraction Processing
+- INFO - 
+ === Process Initialization === 
+- INFO - -- Process Setting 
+- INFO - ----- Corpus source: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/test/ (amr)
+- INFO - ----- Base output dir: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622
+- INFO - ----- technical dir path: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/
+- INFO - ----- Ontology target (id): SimpleTest
+- INFO - ----- Current path: /home/lamenji/Workspace/Tetras/tenet/tenet
+- DEBUG - ----- Config file: /home/lamenji/Workspace/Tetras/tenet/tenet/owl_amr_config.xml
+- DEBUG - 
+  ***  Config (Full Parameters) *** 
+  -- Base Parameters
+  ----- config file: /home/lamenji/Workspace/Tetras/tenet/tenet/owl_amr_config.xml
+  ----- uuid: SimpleTest
+  ----- technical base name: SimpleTest
+  ----- source corpus: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/test/
+  ----- target reference: base
+  ----- process level: sentence
+  ----- source type: amr
+  ----- extraction scheme: owl_amr_scheme_1
+  -- Directories
+  ----- base directory: ./
+  ----- structure directory: ./structure/
+  ----- CTS directory: ./scheme/
+  ----- target frame directory: ./../input/targetFrameStructure/
+  ----- input document directory: 
+  ----- base output dir: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622
+  ----- output directory: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/SimpleTest-20230622/
+  ----- sentence output directory: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/
+  ----- technical dir path: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/
+  -- Config File Definition
+  ----- schema file: ./structure/amr-rdf-schema.ttl
+  ----- semantic net file: ./structure/owl-snet-schema.ttl
+  ----- config param file: ./structure/config-parameters.ttl
+  ----- base ontology file: ./structure/base-ontology.ttl
+  ----- CTS file: ./scheme/owl_amr_scheme_1.py
+  -- Useful References for Ontology
+  ----- base URI: https://tenet.tetras-libre.fr/working
+  ----- ontology suffix: -ontology.ttl
+  ----- ontology seed suffix: -ontology-seed.ttl
+  -- Source File Definition
+  ----- source sentence file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/test/**/*.ttl
+  -- Target File Definition
+  ----- frame ontology file: ./../input/targetFrameStructure/base-ontology.ttl
+  ----- frame ontology seed file: ./../input/targetFrameStructure/base-ontology-seed.ttl
+  -- Output
+  ----- ontology namespace: https://tenet.tetras-libre.fr/base-ontology/
+  ----- output file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest.ttl
+  *** - *** 
+- DEBUG - -- Counting number of graph files (sentences) 
+- INFO - ----- Number of Graphs: 2
+- INFO - 
+ === Extraction Processing === 
+- INFO -      *** sentence 1 *** 
+- INFO - -- Work Structure Preparation
+- DEBUG - --- Graph Initialization
+- DEBUG - ----- Configuration Loading
+- DEBUG - -------- RDF Schema (320)
+- DEBUG - -------- Semantic Net Definition (486)
+- DEBUG - -------- Config Parameter Definition (520)
+- DEBUG - ----- Frame Ontology Loading
+- DEBUG - -------- Base Ontology produced as output (550)
+- DEBUG - --- Source Data Import
+- DEBUG - ----- Sentence Loading
+- DEBUG - -------- /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/test/test-1.amr.ttl (564)
+- DEBUG - --- Export work graph as turtle
+- DEBUG - ----- Work graph file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-1/SimpleTest.ttl 
+- INFO - ----- Sentence (id): test-2
+- INFO - ----- Sentence (text): Earth is a planet.
+- INFO - -- Loading Extraction Scheme (owl_amr_scheme_1)
+- DEBUG - ----- Step number: 3
+- INFO - -- Loading Extraction Rules (amr_master_rule/*)
+- DEBUG - ----- Total rule number: 0
+- INFO - -- Step 1: Preprocessing
+- INFO - --- Sequence: Bug fixing for some known anomalies of AMR-LD data
+- DEBUG - ----- fix AMR bug (1): 0/0 new triple (564, 0:00:00.025924)
+- INFO - --- Sequence: AMR reification from AMR-Linked-Data to AMR (tenet) structure
+- DEBUG - ----- reclassify AMR-LD concept (1): 0/0 new triple (564, 0:00:00.096583)
+- DEBUG - ----- reclassify AMR-LD concept (2): 0/0 new triple (564, 0:00:00.081076)
+- DEBUG - ----- reclassify AMR-LD concept (3): 0/0 new triple (564, 0:00:00.037561)
+- INFO - ----- reclassify AMR-LD concept (4): 4/4 new triples (568, 0:00:00.060175)
+- INFO - ----- reclassify AMR-LD concept (5): 8/8 new triples (576, 0:00:00.041120)
+- DEBUG - ----- reify roles as concept: 0/0 new triple (576, 0:00:00.058877)
+- INFO - ----- reclassify existing variable: 13/13 new triples (589, 0:00:00.025378)
+- DEBUG - ----- add new variable for reified concept: 0/0 new triple (589, 0:00:00.073205)
+- INFO - ----- add AMR leaf for reclassified concept: 9/9 new triples (598, 0:00:00.012887)
+- DEBUG - ----- add AMR leaf for reified concept: 0/0 new triple (598, 0:00:00.021571)
+- INFO - ----- add AMR edge for core relation: 3/3 new triples (601, 0:00:00.119831)
+- DEBUG - ----- add AMR edge for reified concept: 0/0 new triple (601, 0:00:00.039252)
+- INFO - ----- add AMR edge for name relation: 5/5 new triples (606, 0:00:00.027746)
+- DEBUG - ----- add AMR edge for quant relation: 0/0 new triple (606, 0:00:00.035285)
+- DEBUG - ----- add AMR edge for polarity relation: 0/0 new triple (606, 0:00:00.038834)
+- INFO - ----- update AMR edge role 1: 2/2 new triples (608, 0:00:00.040501)
+- INFO - ----- add AMR root: 10/10 new triples (618, 0:00:00.019467)
+- DEBUG - --- Serializing graph to SimpleTest_Preprocessing 
+- DEBUG - ----- step: Preprocessing
+- DEBUG - ----- id: SimpleTest
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-1/SimpleTest_Preprocessing.ttl
+- DEBUG - ----- base: http://SimpleTest/Preprocessing
+- INFO - ----- 54 triples extracted during Preprocessing step
+- INFO - -- Step 2: Transduction
+- INFO - --- Sequence: atomic extraction sequence
+- INFO - ----- extract atom classes: 18/18 new triples (636, 0:00:00.162746)
+- INFO - ----- extract atom individuals: 8/8 new triples (644, 0:00:00.063129)
+- DEBUG - ----- extract atomic properties: 0/0 new triple (644, 0:00:00.010331)
+- INFO - ----- extract atom values: 5/5 new triples (649, 0:00:00.039150)
+- DEBUG - ----- extract atom phenomena: 0/0 new triple (649, 0:00:00.018703)
+- INFO - ----- propagate atom relations: 5/10 new triples (654, 0:00:00.401424)
+- INFO - --- Sequence: classification sequence (1)
+- DEBUG - ----- classify modality phenomena: 0/0 new triple (654, 0:00:00.036991)
+- DEBUG - ----- reclassify argument property to class: 0/0 new triple (654, 0:00:00.042611)
+- INFO - --- Sequence: phenomena analyze sequence (1)
+- DEBUG - ----- analyze "polarity" phenomena (1): 0/0 new triple (654, 0:00:00.010304)
+- DEBUG - ----- analyze "polarity" phenomena (2): 0/0 new triple (654, 0:00:00.022790)
+- DEBUG - ----- analyze "polarity" phenomena (3): 0/0 new triple (654, 0:00:00.048637)
+- DEBUG - ----- analyze "polarity" phenomena (4): 0/0 new triple (654, 0:00:00.054865)
+- DEBUG - ----- analyze "polarity" phenomena (5): 0/0 new triple (654, 0:00:00.052848)
+- DEBUG - ----- analyze modifier phenomena (mod): 0/0 new triple (654, 0:00:00.012645)
+- DEBUG - ----- classify modality phenomena: 0/0 new triple (654, 0:00:00.028566)
+- INFO - --- Sequence: phenomena analyze sequence (2)
+- DEBUG - ----- analyze "or" phenomena (1): 0/0 new triple (654, 0:00:00.019523)
+- DEBUG - ----- analyze "or" phenomena (2): 0/0 new triple (654, 0:00:00.019335)
+- DEBUG - ----- analyze "and" phenomena (1): 0/0 new triple (654, 0:00:00.015443)
+- DEBUG - ----- analyze "and" phenomena (2): 0/0 new triple (654, 0:00:00.017327)
+- INFO - --- Sequence: composite class extraction sequence
+- DEBUG - ----- extract composite classes (1): 0/0 new triple (654, 0:00:00.041870)
+- DEBUG - ----- extract composite classes (2): 0/0 new triple (654, 0:00:00.035853)
+- INFO - --- Sequence: classification sequence (2)
+- DEBUG - ----- classify class net as entity from core arguments: 0/0 new triple (654, 0:00:00.033834)
+- DEBUG - ----- classify class net as entity from :part relation: 0/0 new triple (654, 0:00:00.017214)
+- DEBUG - ----- classify class net as entity from degree arguments: 0/0 new triple (654, 0:00:00.021848)
+- INFO - ----- Associate mother to class net from :domain relation: 2/4 new triples (656, 0:00:00.032575)
+- DEBUG - ----- Propagate individuals to net with same base node: 0/4 new triple (656, 0:00:00.037934)
+- DEBUG - ----- Propagate individuals to net with domain link: 0/0 new triple (656, 0:00:00.014191)
+- DEBUG - --- Serializing graph to SimpleTest_Transduction 
+- DEBUG - ----- step: Transduction
+- DEBUG - ----- id: SimpleTest
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-1/SimpleTest_Transduction.ttl
+- DEBUG - ----- base: http://SimpleTest/Transduction
+- INFO - ----- 38 triples extracted during Transduction step
+- INFO - -- Step 3: Generation
+- INFO - --- Sequence: OWL Generation Sequence
+- INFO - ----- generate OWL class: 8/8 new triples (664, 0:00:00.099176)
+- DEBUG - ----- generate OWL property: 0/0 new triple (664, 0:00:00.017428)
+- INFO - ----- generate OWL individual: 4/4 new triples (668, 0:00:00.063632)
+- DEBUG - --- Serializing graph to SimpleTest_Generation 
+- DEBUG - ----- step: Generation
+- DEBUG - ----- id: SimpleTest
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-1/SimpleTest_Generation.ttl
+- DEBUG - ----- base: http://SimpleTest/Generation
+- INFO - ----- 12 triples extracted during Generation step
+- DEBUG - --- Serializing graph to factoid file (/home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-1/SimpleTest_factoid.ttl)
+- DEBUG - ----- Number of factoids: 12
+- DEBUG - ----- Graph base: http://SimpleTest/factoid
+- INFO -      *** sentence 2 *** 
+- INFO - -- Work Structure Preparation
+- DEBUG - --- Graph Initialization
+- DEBUG - ----- Configuration Loading
+- DEBUG - -------- RDF Schema (320)
+- DEBUG - -------- Semantic Net Definition (486)
+- DEBUG - -------- Config Parameter Definition (520)
+- DEBUG - ----- Frame Ontology Loading
+- DEBUG - -------- Base Ontology produced as output (550)
+- DEBUG - --- Source Data Import
+- DEBUG - ----- Sentence Loading
+- DEBUG - -------- /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/test/test-02.stog.amr.ttl (559)
+- DEBUG - --- Export work graph as turtle
+- DEBUG - ----- Work graph file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-2/SimpleTest.ttl 
+- INFO - ----- Sentence (id): test-02
+- INFO - ----- Sentence (text): Earth is a planet.
+- INFO - -- Loading Extraction Scheme (owl_amr_scheme_1)
+- DEBUG - ----- Step number: 3
+- INFO - -- Loading Extraction Rules (amr_master_rule/*)
+- DEBUG - ----- Total rule number: 0
+- INFO - -- Step 1: Preprocessing
+- INFO - --- Sequence: Bug fixing for some known anomalies of AMR-LD data
+- DEBUG - ----- fix AMR bug (1): 0/0 new triple (559, 0:00:00.022139)
+- INFO - --- Sequence: AMR reification from AMR-Linked-Data to AMR (tenet) structure
+- DEBUG - ----- reclassify AMR-LD concept (1): 0/0 new triple (559, 0:00:00.090594)
+- DEBUG - ----- reclassify AMR-LD concept (2): 0/0 new triple (559, 0:00:00.089702)
+- DEBUG - ----- reclassify AMR-LD concept (3): 0/0 new triple (559, 0:00:00.044228)
+- DEBUG - ----- reclassify AMR-LD concept (4): 0/0 new triple (559, 0:00:00.081962)
+- INFO - ----- reclassify AMR-LD concept (5): 4/4 new triples (563, 0:00:00.044447)
+- DEBUG - ----- reify roles as concept: 0/0 new triple (563, 0:00:00.061699)
+- INFO - ----- reclassify existing variable: 5/5 new triples (568, 0:00:00.025641)
+- DEBUG - ----- add new variable for reified concept: 0/0 new triple (568, 0:00:00.082752)
+- INFO - ----- add AMR leaf for reclassified concept: 3/3 new triples (571, 0:00:00.015301)
+- DEBUG - ----- add AMR leaf for reified concept: 0/0 new triple (571, 0:00:00.018792)
+- DEBUG - ----- add AMR edge for core relation: 0/0 new triple (571, 0:00:00.095503)
+- DEBUG - ----- add AMR edge for reified concept: 0/0 new triple (571, 0:00:00.031974)
+- INFO - ----- add AMR edge for name relation: 5/5 new triples (576, 0:00:00.019878)
+- DEBUG - ----- add AMR edge for quant relation: 0/0 new triple (576, 0:00:00.023482)
+- DEBUG - ----- add AMR edge for polarity relation: 0/0 new triple (576, 0:00:00.031202)
+- INFO - ----- update AMR edge role 1: 1/1 new triple (577, 0:00:00.027050)
+- INFO - ----- add AMR root: 5/5 new triples (582, 0:00:00.013322)
+- DEBUG - --- Serializing graph to SimpleTest_Preprocessing 
+- DEBUG - ----- step: Preprocessing
+- DEBUG - ----- id: SimpleTest
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-2/SimpleTest_Preprocessing.ttl
+- DEBUG - ----- base: http://SimpleTest/Preprocessing
+- INFO - ----- 23 triples extracted during Preprocessing step
+- INFO - -- Step 2: Transduction
+- INFO - --- Sequence: atomic extraction sequence
+- INFO - ----- extract atom classes: 6/6 new triples (588, 0:00:00.058641)
+- INFO - ----- extract atom individuals: 8/8 new triples (596, 0:00:00.065855)
+- DEBUG - ----- extract atomic properties: 0/0 new triple (596, 0:00:00.008608)
+- INFO - ----- extract atom values: 5/5 new triples (601, 0:00:00.039414)
+- DEBUG - ----- extract atom phenomena: 0/0 new triple (601, 0:00:00.009712)
+- INFO - ----- propagate atom relations: 3/6 new triples (604, 0:00:00.232443)
+- INFO - --- Sequence: classification sequence (1)
+- DEBUG - ----- classify modality phenomena: 0/0 new triple (604, 0:00:00.028526)
+- DEBUG - ----- reclassify argument property to class: 0/0 new triple (604, 0:00:00.036231)
+- INFO - --- Sequence: phenomena analyze sequence (1)
+- DEBUG - ----- analyze "polarity" phenomena (1): 0/0 new triple (604, 0:00:00.010851)
+- DEBUG - ----- analyze "polarity" phenomena (2): 0/0 new triple (604, 0:00:00.024459)
+- DEBUG - ----- analyze "polarity" phenomena (3): 0/0 new triple (604, 0:00:00.023668)
+- DEBUG - ----- analyze "polarity" phenomena (4): 0/0 new triple (604, 0:00:00.041175)
+- DEBUG - ----- analyze "polarity" phenomena (5): 0/0 new triple (604, 0:00:00.054424)
+- DEBUG - ----- analyze modifier phenomena (mod): 0/0 new triple (604, 0:00:00.012984)
+- DEBUG - ----- classify modality phenomena: 0/0 new triple (604, 0:00:00.032391)
+- INFO - --- Sequence: phenomena analyze sequence (2)
+- DEBUG - ----- analyze "or" phenomena (1): 0/0 new triple (604, 0:00:00.022122)
+- DEBUG - ----- analyze "or" phenomena (2): 0/0 new triple (604, 0:00:00.020890)
+- DEBUG - ----- analyze "and" phenomena (1): 0/0 new triple (604, 0:00:00.022459)
+- DEBUG - ----- analyze "and" phenomena (2): 0/0 new triple (604, 0:00:00.045960)
+- INFO - --- Sequence: composite class extraction sequence
+- DEBUG - ----- extract composite classes (1): 0/0 new triple (604, 0:00:00.042947)
+- DEBUG - ----- extract composite classes (2): 0/0 new triple (604, 0:00:00.038795)
+- INFO - --- Sequence: classification sequence (2)
+- DEBUG - ----- classify class net as entity from core arguments: 0/0 new triple (604, 0:00:00.040893)
+- DEBUG - ----- classify class net as entity from :part relation: 0/0 new triple (604, 0:00:00.018300)
+- DEBUG - ----- classify class net as entity from degree arguments: 0/0 new triple (604, 0:00:00.026334)
+- DEBUG - ----- Associate mother to class net from :domain relation: 0/0 new triple (604, 0:00:00.012053)
+- DEBUG - ----- Propagate individuals to net with same base node: 0/4 new triple (604, 0:00:00.038431)
+- DEBUG - ----- Propagate individuals to net with domain link: 0/0 new triple (604, 0:00:00.014618)
+- DEBUG - --- Serializing graph to SimpleTest_Transduction 
+- DEBUG - ----- step: Transduction
+- DEBUG - ----- id: SimpleTest
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-2/SimpleTest_Transduction.ttl
+- DEBUG - ----- base: http://SimpleTest/Transduction
+- INFO - ----- 22 triples extracted during Transduction step
+- INFO - -- Step 3: Generation
+- INFO - --- Sequence: OWL Generation Sequence
+- DEBUG - ----- generate OWL class: 0/0 new triple (604, 0:00:00.031672)
+- DEBUG - ----- generate OWL property: 0/0 new triple (604, 0:00:00.022164)
+- INFO - ----- generate OWL individual: 4/4 new triples (608, 0:00:00.074716)
+- DEBUG - --- Serializing graph to SimpleTest_Generation 
+- DEBUG - ----- step: Generation
+- DEBUG - ----- id: SimpleTest
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-2/SimpleTest_Generation.ttl
+- DEBUG - ----- base: http://SimpleTest/Generation
+- INFO - ----- 4 triples extracted during Generation step
+- DEBUG - --- Serializing graph to factoid file (/home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/technical-data/SimpleTest-2/SimpleTest_factoid.ttl)
+- DEBUG - ----- Number of factoids: 4
+- DEBUG - ----- Graph base: http://SimpleTest/factoid
+- INFO - 
+ === Final Ontology Generation  === 
+- INFO - -- Making complete factoid graph by merging the result factoids
+- INFO - ----- Total factoid number: 16
+- INFO - -- Serializing graph to factoid string
+- INFO - ----- Graph base: http://SimpleTest/factoid
+- INFO - -- Serializing graph to factoid file
+- INFO - ----- Ontology Turtle File: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SimpleTest-20230622/SimpleTest_factoid.ttl
+- INFO - 
+ === Done === 

tests/main_tests/test_owl_output/SolarSystemDev01-20230622/SolarSystemDev01_factoid.ttl

+@prefix ns1: <https://tenet.tetras-libre.fr/base-ontology#> .
+@prefix owl: <http://www.w3.org/2002/07/owl#> .
+@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
+
+<https://tenet.tetras-libre.fr/extract-result#SolarSystem> a owl:Individual,
+        <https://tenet.tetras-libre.fr/extract-result#system>,
+        <https://tenet.tetras-libre.fr/extract-result#system-hasPart-object>,
+        <https://tenet.tetras-libre.fr/extract-result#system-hasPart-sun> ;
+    rdfs:label "SolarSystem" ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#direct> a owl:ObjectProperty ;
+    rdfs:label "direct" ;
+    rdfs:subPropertyOf ns1:Out_ObjectProperty ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#gravitation-bind-system> a owl:Class ;
+    rdfs:subClassOf [ a owl:Restriction ;
+            owl:onProperty <https://tenet.tetras-libre.fr/extract-result#bind> ;
+            owl:someValuesFrom <https://tenet.tetras-libre.fr/extract-result#system> ],
+        <https://tenet.tetras-libre.fr/extract-result#gravitation> ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#hasManner> a owl:ObjectProperty ;
+    rdfs:label "hasManner" ;
+    rdfs:subPropertyOf ns1:Out_ObjectProperty ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#not-direct> a owl:ObjectProperty ;
+    rdfs:subPropertyOf ns1:Out_ObjectProperty ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#object-orbit-hasManner-direct-sun> a owl:Class ;
+    rdfs:subClassOf [ a owl:Restriction ;
+            owl:onProperty <https://tenet.tetras-libre.fr/extract-result#orbit-hasManner-direct> ;
+            owl:someValuesFrom <https://tenet.tetras-libre.fr/extract-result#sun> ],
+        <https://tenet.tetras-libre.fr/extract-result#object> ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#object-orbit-hasManner-not-direct-sun> a owl:Class ;
+    rdfs:subClassOf [ a owl:Restriction ;
+            owl:onProperty <https://tenet.tetras-libre.fr/extract-result#orbit-hasManner-not-direct> ;
+            owl:someValuesFrom <https://tenet.tetras-libre.fr/extract-result#sun> ],
+        <https://tenet.tetras-libre.fr/extract-result#object> ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#bind> a owl:ObjectProperty ;
+    rdfs:label "bind" ;
+    rdfs:subPropertyOf ns1:Out_ObjectProperty ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#gravitation> a owl:Class ;
+    rdfs:label "gravitation" ;
+    rdfs:subClassOf ns1:Entity ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#orbit-hasManner-direct> a owl:ObjectProperty ;
+    rdfs:subPropertyOf <https://tenet.tetras-libre.fr/extract-result#orbit> ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#orbit-hasManner-not-direct> a owl:ObjectProperty ;
+    rdfs:subPropertyOf <https://tenet.tetras-libre.fr/extract-result#orbit> ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#system-hasPart-object> a owl:Class ;
+    rdfs:subClassOf [ a owl:Restriction ;
+            owl:onProperty <https://tenet.tetras-libre.fr/extract-result#hasPart> ;
+            owl:someValuesFrom <https://tenet.tetras-libre.fr/extract-result#object> ],
+        <https://tenet.tetras-libre.fr/extract-result#system> ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#system-hasPart-sun> a owl:Class ;
+    rdfs:subClassOf [ a owl:Restriction ;
+            owl:onProperty <https://tenet.tetras-libre.fr/extract-result#hasPart> ;
+            owl:someValuesFrom <https://tenet.tetras-libre.fr/extract-result#sun> ],
+        <https://tenet.tetras-libre.fr/extract-result#system> ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#hasPart> a owl:ObjectProperty ;
+    rdfs:label "hasPart" ;
+    rdfs:subPropertyOf ns1:Out_ObjectProperty ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#orbit> a owl:ObjectProperty ;
+    rdfs:label "orbit" ;
+    rdfs:subPropertyOf ns1:Out_ObjectProperty ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#object> a owl:Class ;
+    rdfs:label "object" ;
+    rdfs:subClassOf ns1:Entity ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#sun> a owl:Class ;
+    rdfs:label "sun" ;
+    rdfs:subClassOf ns1:Entity ;
+    ns1:fromStructure "unknown" .
+
+<https://tenet.tetras-libre.fr/extract-result#system> a owl:Class ;
+    rdfs:label "system" ;
+    rdfs:subClassOf ns1:Entity,
+        ns1:Undetermined_Thing ;
+    ns1:fromStructure "unknown" .
+

tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/tenet.log

+- INFO - [TENET] Extraction Processing
+- INFO - 
+ === Process Initialization === 
+- INFO - -- Process Setting 
+- INFO - ----- Corpus source: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/solar-system-01/ (amr)
+- INFO - ----- Base output dir: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622
+- INFO - ----- technical dir path: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/
+- INFO - ----- Ontology target (id): https://tenet.tetras-libre.fr/demo/01/
+- INFO - ----- Current path: /home/lamenji/Workspace/Tetras/tenet/tenet
+- DEBUG - ----- Config file: /home/lamenji/Workspace/Tetras/tenet/tenet/owl_amr_config.xml
+- DEBUG - 
+  ***  Config (Full Parameters) *** 
+  -- Base Parameters
+  ----- config file: /home/lamenji/Workspace/Tetras/tenet/tenet/owl_amr_config.xml
+  ----- uuid: https://tenet.tetras-libre.fr/demo/01/
+  ----- technical base name: tenet.tetras-libre.fr_demo_01
+  ----- source corpus: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/solar-system-01/
+  ----- target reference: base
+  ----- process level: sentence
+  ----- source type: amr
+  ----- extraction scheme: owl_amr_scheme_1
+  -- Directories
+  ----- base directory: ./
+  ----- structure directory: ./structure/
+  ----- CTS directory: ./scheme/
+  ----- target frame directory: ./../input/targetFrameStructure/
+  ----- input document directory: 
+  ----- base output dir: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622
+  ----- output directory: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/tenet.tetras-libre.fr_demo_01-20230622/
+  ----- sentence output directory: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/
+  ----- technical dir path: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/
+  -- Config File Definition
+  ----- schema file: ./structure/amr-rdf-schema.ttl
+  ----- semantic net file: ./structure/owl-snet-schema.ttl
+  ----- config param file: ./structure/config-parameters.ttl
+  ----- base ontology file: ./structure/base-ontology.ttl
+  ----- CTS file: ./scheme/owl_amr_scheme_1.py
+  -- Useful References for Ontology
+  ----- base URI: https://tenet.tetras-libre.fr/working
+  ----- ontology suffix: -ontology.ttl
+  ----- ontology seed suffix: -ontology-seed.ttl
+  -- Source File Definition
+  ----- source sentence file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/solar-system-01/**/*.ttl
+  -- Target File Definition
+  ----- frame ontology file: ./../input/targetFrameStructure/base-ontology.ttl
+  ----- frame ontology seed file: ./../input/targetFrameStructure/base-ontology-seed.ttl
+  -- Output
+  ----- ontology namespace: https://tenet.tetras-libre.fr/base-ontology/
+  ----- output file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/tenet.tetras-libre.fr_demo_01.ttl
+  *** - *** 
+- DEBUG - -- Counting number of graph files (sentences) 
+- INFO - ----- Number of Graphs: 1
+- INFO - 
+ === Extraction Processing === 
+- INFO -      *** sentence 1 *** 
+- INFO - -- Work Structure Preparation
+- DEBUG - --- Graph Initialization
+- DEBUG - ----- Configuration Loading
+- DEBUG - -------- RDF Schema (320)
+- DEBUG - -------- Semantic Net Definition (486)
+- DEBUG - -------- Config Parameter Definition (520)
+- DEBUG - ----- Frame Ontology Loading
+- DEBUG - -------- Base Ontology produced as output (550)
+- DEBUG - --- Source Data Import
+- DEBUG - ----- Sentence Loading
+- DEBUG - -------- /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_data/amrDocuments/dev/solar-system-01/SSC-01-01.stog.amr.ttl (598)
+- DEBUG - --- Export work graph as turtle
+- DEBUG - ----- Work graph file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/tenet.tetras-libre.fr_demo_01-1/tenet.tetras-libre.fr_demo_01.ttl 
+- INFO - ----- Sentence (id): SSC-01-01
+- INFO - ----- Sentence (text): The Solar System is the gravitationally bound system of the Sun and the objects that orbit it, either directly or indirectly.
+- INFO - -- Loading Extraction Scheme (owl_amr_scheme_1)
+- DEBUG - ----- Step number: 3
+- INFO - -- Loading Extraction Rules (amr_master_rule/*)
+- DEBUG - ----- Total rule number: 0
+- INFO - -- Step 1: Preprocessing
+- INFO - --- Sequence: Bug fixing for some known anomalies of AMR-LD data
+- INFO - ----- fix AMR bug (1): 5/5 new triples (603, 0:00:00.029635)
+- INFO - --- Sequence: AMR reification from AMR-Linked-Data to AMR (tenet) structure
+- INFO - ----- reclassify AMR-LD concept (1): 10/10 new triples (613, 0:00:00.146474)
+- DEBUG - ----- reclassify AMR-LD concept (2): 0/0 new triple (613, 0:00:00.077928)
+- INFO - ----- reclassify AMR-LD concept (3): 12/12 new triples (625, 0:00:00.045702)
+- INFO - ----- reclassify AMR-LD concept (4): 16/16 new triples (641, 0:00:00.078881)
+- INFO - ----- reclassify AMR-LD concept (5): 2/4 new triples (643, 0:00:00.045371)
+- INFO - ----- reify roles as concept: 10/10 new triples (653, 0:00:00.075889)
+- INFO - ----- reclassify existing variable: 45/45 new triples (698, 0:00:00.034244)
+- INFO - ----- add new variable for reified concept: 8/8 new triples (706, 0:00:00.083276)
+- INFO - ----- add AMR leaf for reclassified concept: 33/33 new triples (739, 0:00:00.032104)
+- INFO - ----- add AMR leaf for reified concept: 8/8 new triples (747, 0:00:00.019376)
+- INFO - ----- add AMR edge for core relation: 27/27 new triples (774, 0:00:00.142878)
+- INFO - ----- add AMR edge for reified concept: 12/12 new triples (786, 0:00:00.104593)
+- INFO - ----- add AMR edge for name relation: 5/5 new triples (791, 0:00:00.027496)
+- DEBUG - ----- add AMR edge for quant relation: 0/0 new triple (791, 0:00:00.038271)
+- INFO - ----- add AMR edge for polarity relation: 5/5 new triples (796, 0:00:00.038545)
+- INFO - ----- update AMR edge role 1: 15/15 new triples (811, 0:00:00.107233)
+- INFO - ----- add AMR root: 5/5 new triples (816, 0:00:00.018168)
+- DEBUG - --- Serializing graph to tenet.tetras-libre.fr_demo_01_Preprocessing 
+- DEBUG - ----- step: Preprocessing
+- DEBUG - ----- id: https://tenet.tetras-libre.fr/demo/01/
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/tenet.tetras-libre.fr_demo_01-1/tenet.tetras-libre.fr_demo_01_Preprocessing.ttl
+- DEBUG - ----- base: http://https://tenet.tetras-libre.fr/demo/01//Preprocessing
+- INFO - ----- 218 triples extracted during Preprocessing step
+- INFO - -- Step 2: Transduction
+- INFO - --- Sequence: atomic extraction sequence
+- INFO - ----- extract atom classes: 30/30 new triples (846, 0:00:00.253934)
+- INFO - ----- extract atom individuals: 8/8 new triples (854, 0:00:00.078142)
+- INFO - ----- extract atomic properties: 75/75 new triples (929, 0:00:00.354001)
+- INFO - ----- extract atom values: 10/10 new triples (939, 0:00:00.078436)
+- INFO - ----- extract atom phenomena: 14/14 new triples (953, 0:00:00.106255)
+- INFO - ----- propagate atom relations: 24/68 new triples (977, 0:00:01.465473)
+- INFO - --- Sequence: classification sequence (1)
+- DEBUG - ----- classify modality phenomena: 0/0 new triple (977, 0:00:00.033970)
+- INFO - ----- reclassify argument property to class: 11/14 new triples (988, 0:00:00.134934)
+- INFO - --- Sequence: phenomena analyze sequence (1)
+- INFO - ----- analyze "polarity" phenomena (1): 32/36 new triples (1020, 0:00:00.160458)
+- DEBUG - ----- analyze "polarity" phenomena (2): 0/0 new triple (1020, 0:00:00.026647)
+- DEBUG - ----- analyze "polarity" phenomena (3): 0/0 new triple (1020, 0:00:00.022786)
+- DEBUG - ----- analyze "polarity" phenomena (4): 0/0 new triple (1020, 0:00:00.054046)
+- DEBUG - ----- analyze "polarity" phenomena (5): 0/0 new triple (1020, 0:00:00.051974)
+- DEBUG - ----- analyze modifier phenomena (mod): 0/0 new triple (1020, 0:00:00.014353)
+- DEBUG - ----- classify modality phenomena: 0/0 new triple (1020, 0:00:00.030794)
+- INFO - --- Sequence: phenomena analyze sequence (2)
+- INFO - ----- analyze "or" phenomena (1): 1/1 new triple (1021, 0:00:00.126660)
+- INFO - ----- analyze "or" phenomena (2): 55/82 new triples (1076, 0:00:00.428262)
+- INFO - ----- analyze "and" phenomena (1): 2/14 new triples (1078, 0:00:00.232554)
+- DEBUG - ----- analyze "and" phenomena (2): 0/0 new triple (1078, 0:00:00.021784)
+- INFO - --- Sequence: composite class extraction sequence
+- INFO - ----- extract composite classes (1): 127/138 new triples (1205, 0:00:00.820543)
+- DEBUG - ----- extract composite classes (2): 0/0 new triple (1205, 0:00:00.047416)
+- INFO - --- Sequence: classification sequence (2)
+- INFO - ----- classify class net as entity from core arguments: 10/181 new triples (1215, 0:00:00.437574)
+- DEBUG - ----- classify class net as entity from :part relation: 0/0 new triple (1215, 0:00:00.013148)
+- DEBUG - ----- classify class net as entity from degree arguments: 0/0 new triple (1215, 0:00:00.026384)
+- INFO - ----- Associate mother to class net from :domain relation: 5/34 new triples (1220, 0:00:00.118444)
+- DEBUG - ----- Propagate individuals to net with same base node: 0/10 new triple (1220, 0:00:00.045410)
+- INFO - ----- Propagate individuals to net with domain link: 3/60 new triples (1223, 0:00:00.178639)
+- DEBUG - --- Serializing graph to tenet.tetras-libre.fr_demo_01_Transduction 
+- DEBUG - ----- step: Transduction
+- DEBUG - ----- id: https://tenet.tetras-libre.fr/demo/01/
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/tenet.tetras-libre.fr_demo_01-1/tenet.tetras-libre.fr_demo_01_Transduction.ttl
+- DEBUG - ----- base: http://https://tenet.tetras-libre.fr/demo/01//Transduction
+- INFO - ----- 407 triples extracted during Transduction step
+- INFO - -- Step 3: Generation
+- INFO - --- Sequence: OWL Generation Sequence
+- INFO - ----- generate OWL class: 52/55 new triples (1275, 0:00:00.928376)
+- INFO - ----- generate OWL property: 29/29 new triples (1304, 0:00:00.477319)
+- INFO - ----- generate OWL individual: 6/7 new triples (1310, 0:00:00.133939)
+- DEBUG - --- Serializing graph to tenet.tetras-libre.fr_demo_01_Generation 
+- DEBUG - ----- step: Generation
+- DEBUG - ----- id: https://tenet.tetras-libre.fr/demo/01/
+- DEBUG - ----- work_file: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/tenet.tetras-libre.fr_demo_01-1/tenet.tetras-libre.fr_demo_01_Generation.ttl
+- DEBUG - ----- base: http://https://tenet.tetras-libre.fr/demo/01//Generation
+- INFO - ----- 87 triples extracted during Generation step
+- DEBUG - --- Serializing graph to factoid file (/home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/technical-data/tenet.tetras-libre.fr_demo_01-1/tenet.tetras-libre.fr_demo_01_factoid.ttl)
+- DEBUG - ----- Number of factoids: 91
+- DEBUG - ----- Graph base: http://https://tenet.tetras-libre.fr/demo/01//factoid
+- INFO - 
+ === Final Ontology Generation  === 
+- INFO - -- Making complete factoid graph by merging the result factoids
+- INFO - ----- Total factoid number: 91
+- INFO - -- Serializing graph to factoid string
+- INFO - ----- Graph base: http://https://tenet.tetras-libre.fr/demo/01//factoid
+- INFO - -- Serializing graph to factoid file
+- INFO - ----- Ontology Turtle File: /home/lamenji/Workspace/Tetras/tenet/tests/main_tests/test_owl_output/SolarSystemDev01-20230622/SolarSystemDev01_factoid.ttl
+- INFO - 
+ === Done ===