diff --git a/tetras-mars-web-app-advanced.ipynb b/tetras-mars-web-app-advanced.ipynb
index f473c79f66911cdd145dc3b2b8a3f76a96a277e2..1fa0c96a575c41161d472dc0a7e6e404929d79d6 100644
--- a/tetras-mars-web-app-advanced.ipynb
+++ b/tetras-mars-web-app-advanced.ipynb
@@ -40,7 +40,7 @@
"#######################################################################################################\n",
"shaclBase = '/opt/dashboards/tools/shacl-1.3.2/bin/'\n",
"owl2vowlPath = '/opt/dashboards/tools/owl2vowl_0.3.7/owl2vowl.jar'\n",
- "storeBase = '../store/CCTP-SRSA-IP-20210831/'\n",
+ "storeBase = '/opt/data/store/CCTP-SRSA-IP-20210831/'\n",
"extractionGraph = '/opt/dashboards/tetras-lab-unl-demos/work_graph.ttl' # -- old --- extractionGraph = '/opt/dashboards/tetras-lab-unl-demos/extraction-data-9.ttl'\n",
"workDir = 'work-data/'\n",
"webvowlData = '/opt/webvowl'\n",
@@ -702,8 +702,8 @@
"g = loadFactoids(storeBase)\n",
"sparqlUpdate.setQuery('INSERT DATA {'+g.serialize(format='nt')+'}')\n",
"sparqlLog = sparqlUpdate.query()\n",
- "g.serialize(destination='/opt/dashboards/store/extraction2.ttl', format='turtle')\n",
- "owl2vowl('/opt/dashboards/store/extraction2.ttl')\n",
+ "g.serialize(destination='/opt/data/store/extraction2.ttl', format='turtle')\n",
+ "owl2vowl('/opt/data/store/extraction2.ttl')\n",
"\n",
"g = loadSentences(storeBase)\n",
"sparqlUpdate.setQuery('INSERT DATA {'+g.serialize(format='nt')+'}')\n",
@@ -787,8 +787,8 @@
"# Fonctions pour la mise à jour globale du corpus (ne pas exécuter en mode \"Tableau de bord\")\n",
"\n",
"def updateAllFactoids():\n",
- " dirList = ['/opt/dashboards/store/CCTP-SRSA-IP-20210831/SRSA-IP_STB_PHON_00100']\n",
- " #dirList = glob('/opt/dashboards/store/CCTP-SRSA-IP-20210831/*')\n",
+ " dirList = ['/opt/data/store/CCTP-SRSA-IP-20210831/SRSA-IP_STB_PHON_00100']\n",
+ " #dirList = glob('/opt/data/store/CCTP-SRSA-IP-20210831/*')\n",
" for directory in dirList:\n",
" if directory.split('/')[-1] != '0_NONE':\n",
" print(directory)\n",
@@ -799,8 +799,8 @@
" \n",
" \n",
"def updateAllVerificationMessages():\n",
- " #dirList = ['/opt/dashboards/store/CCTP-SRSA-IP-20210831/SRSA-IP_STB_PHON_00100']\n",
- " dirList = glob('/opt/dashboards/store/CCTP-SRSA-IP-20210831/*')\n",
+ " #dirList = ['/opt/data/store/CCTP-SRSA-IP-20210831/SRSA-IP_STB_PHON_00100']\n",
+ " dirList = glob('/opt/data/store/CCTP-SRSA-IP-20210831/*')\n",
" for directory in dirList:\n",
" if directory.split('/')[-1] != '0_NONE':\n",
" print(directory)\n",
@@ -1060,7 +1060,7 @@
" pn.Row(\n",
" #pn.pane.HTML('<a href=\"https://unsel.tetras-lab.io/webvowl#extraction\" target=\"_blank\"><button type=\"button\" class=\"btn btn-outline-secondary btn-sm\">Visualiser l\\'ontologie construite pour tout le corpus</button><a>'),\n",
" #pn.pane.HTML('<a href=\"https://unsel.tetras-lab.io/static/webvowl_1.1.7/index.html#extraction_SRSA-IP_STB_PHON_00100\" target=\"_blank\"><button type=\"button\" class=\"btn btn-outline-secondary btn-sm\">Visualiser l\\'extraction de SRSA-IP_STB_PHON_00100</button><a>'), \n",
- " pn.widgets.FileDownload(file='/opt/dashboards/static/extraction.ttl', embed=True)\n",
+ " pn.widgets.FileDownload(file='/opt/data/static/extraction.ttl', embed=True)\n",
" ), title = \"Résultats sur le corpus\", width=pane_width+50, collapsed=True\n",
" ), \n",
")\n"
@@ -1073,10 +1073,10 @@
"metadata": {},
"outputs": [],
"source": [
- "#list = glob('/opt/dashboards/store/CCTP-SRSA-IP-20210831/*')\n",
+ "#list = glob('/opt/data/store/CCTP-SRSA-IP-20210831/*')\n",
"#for d in list : \n",
"# print(d)\n",
- "# uuidStr = d.replace('/opt/dashboards/store/CCTP-SRSA-IP-20210831/','')\n",
+ "# uuidStr = d.replace('/opt/data/store/CCTP-SRSA-IP-20210831/','')\n",
"# createOnto(uuidStr)"
]
}
diff --git a/tetras-mars-web-app-navigation.ipynb b/tetras-mars-web-app-navigation.ipynb
index 6a40920e012b6ce105710f35de63c18d01dfa5b4..ad4cfef6b9bfbca4e6b4d04cbeb05cdb27c931d8 100644
--- a/tetras-mars-web-app-navigation.ipynb
+++ b/tetras-mars-web-app-navigation.ipynb
@@ -2,421 +2,10 @@
"cells": [
{
"cell_type": "code",
- "execution_count": 1,
+ "execution_count": null,
"id": "160ab8ab-091e-4b00-b63a-c3746c71c540",
"metadata": {},
- "outputs": [
- {
- "data": {
- "application/javascript": [
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- "(function(root) {\n",
- " function now() {\n",
- " return new Date();\n",
- " }\n",
- "\n",
- " var force = true;\n",
- "\n",
- " if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n",
- " root._bokeh_onload_callbacks = [];\n",
- " root._bokeh_is_loading = undefined;\n",
- " }\n",
- "\n",
- " if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n",
- " root._bokeh_timeout = Date.now() + 5000;\n",
- " root._bokeh_failed_load = false;\n",
- " }\n",
- "\n",
- " function run_callbacks() {\n",
- " try {\n",
- " root._bokeh_onload_callbacks.forEach(function(callback) {\n",
- " if (callback != null)\n",
- " callback();\n",
- " });\n",
- " } finally {\n",
- " delete root._bokeh_onload_callbacks\n",
- " }\n",
- " console.debug(\"Bokeh: all callbacks have finished\");\n",
- " }\n",
- "\n",
- " function load_libs(css_urls, js_urls, js_modules, callback) {\n",
- " if (css_urls == null) css_urls = [];\n",
- " if (js_urls == null) js_urls = [];\n",
- " if (js_modules == null) js_modules = [];\n",
- "\n",
- " root._bokeh_onload_callbacks.push(callback);\n",
- " if (root._bokeh_is_loading > 0) {\n",
- " console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n",
- " return null;\n",
- " }\n",
- " if (js_urls.length === 0 && js_modules.length === 0) {\n",
- " run_callbacks();\n",
- " return null;\n",
- " }\n",
- " console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n",
- " root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length;\n",
- "\n",
- " function on_load() {\n",
- " root._bokeh_is_loading--;\n",
- " if (root._bokeh_is_loading === 0) {\n",
- " console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n",
- " run_callbacks()\n",
- " }\n",
- " }\n",
- "\n",
- " function on_error() {\n",
- " console.error(\"failed to load \" + url);\n",
- " }\n",
- "\n",
- " for (var i = 0; i < css_urls.length; i++) {\n",
- " var url = css_urls[i];\n",
- " const element = document.createElement(\"link\");\n",
- " element.onload = on_load;\n",
- " element.onerror = on_error;\n",
- " element.rel = \"stylesheet\";\n",
- " element.type = \"text/css\";\n",
- " element.href = url;\n",
- " console.debug(\"Bokeh: injecting link tag for BokehJS stylesheet: \", url);\n",
- " document.body.appendChild(element);\n",
- " }\n",
- "\n",
- " var skip = [];\n",
- " if (window.requirejs) {\n",
- " window.requirejs.config({'paths': {'tabulator': 'https://unpkg.com/tabulator-tables@4.9.3/dist/js/tabulator'}});\n",
- " require([\"tabulator\"], function(Tabulator,) {\n",
- " window.Tabulator = Tabulator;\n",
- " })\n",
- " }\n",
- " if (((window['tabulator'] !== undefined) && (!(window['tabulator'] instanceof HTMLElement))) || window.requirejs) {\n",
- " var urls = ['https://unpkg.com/tabulator-tables@4.9.3/dist/js/tabulator.js', 'https://unpkg.com/moment@2.27.0/moment.js'];\n",
- " for (var i = 0; i < urls.length; i++) {\n",
- " skip.push(urls[i])\n",
- " }\n",
- " }\n",
- " for (var i = 0; i < js_urls.length; i++) {\n",
- " var url = js_urls[i];\n",
- " if (skip.indexOf(url) >= 0) { on_load(); continue; }\n",
- " var element = document.createElement('script');\n",
- " element.onload = on_load;\n",
- " element.onerror = on_error;\n",
- " element.async = false;\n",
- " element.src = url;\n",
- " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
- " document.head.appendChild(element);\n",
- " }\n",
- " for (var i = 0; i < js_modules.length; i++) {\n",
- " var url = js_modules[i];\n",
- " if (skip.indexOf(url) >= 0) { on_load(); continue; }\n",
- " var element = document.createElement('script');\n",
- " element.onload = on_load;\n",
- " element.onerror = on_error;\n",
- " element.async = false;\n",
- " element.src = url;\n",
- " element.type = \"module\";\n",
- " console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n",
- " document.head.appendChild(element);\n",
- " }\n",
- " if (!js_urls.length && !js_modules.length) {\n",
- " on_load()\n",
- " }\n",
- " };\n",
- "\n",
- " function inject_raw_css(css) {\n",
- " const element = document.createElement(\"style\");\n",
- " element.appendChild(document.createTextNode(css));\n",
- " document.body.appendChild(element);\n",
- " }\n",
- "\n",
- " var js_urls = [\"https://unpkg.com/tabulator-tables@4.9.3/dist/js/tabulator.js\", \"https://unpkg.com/moment@2.27.0/moment.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-2.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-2.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-2.3.2.min.js\", \"https://unpkg.com/@holoviz/panel@^0.11.3/dist/panel.min.js\"];\n",
- " var js_modules = [];\n",
- " var css_urls = [\"https://unpkg.com/tabulator-tables@4.9.3/dist/css/tabulator_simple.min.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/widgets.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/card.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/dataframe.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/alerts.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/loading.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/markdown.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/json.css\"];\n",
- " var inline_js = [\n",
- " function(Bokeh) {\n",
- " inject_raw_css(\"\\n .bk.pn-loading.arcs:before {\\n background-image: url(\\\"data:image/svg+xml;base64,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\\\")\\n }\\n \");\n",
- " },\n",
- " function(Bokeh) {\n",
- " Bokeh.set_log_level(\"info\");\n",
- " },\n",
- " function(Bokeh) {} // ensure no trailing comma for IE\n",
- " ];\n",
- "\n",
- " function run_inline_js() {\n",
- " if ((root.Bokeh !== undefined) || (force === true)) {\n",
- " for (var i = 0; i < inline_js.length; i++) {\n",
- " inline_js[i].call(root, root.Bokeh);\n",
- " }} else if (Date.now() < root._bokeh_timeout) {\n",
- " setTimeout(run_inline_js, 100);\n",
- " } else if (!root._bokeh_failed_load) {\n",
- " console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n",
- " root._bokeh_failed_load = true;\n",
- " }\n",
- " }\n",
- "\n",
- " if (root._bokeh_is_loading === 0) {\n",
- " console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n",
- " run_inline_js();\n",
- " } else {\n",
- " load_libs(css_urls, js_urls, js_modules, function() {\n",
- " console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n",
- " run_inline_js();\n",
- " });\n",
- " }\n",
- "}(window));"
- ],
- "application/vnd.holoviews_load.v0+json": "\n(function(root) {\n function now() {\n return new Date();\n }\n\n var force = true;\n\n if (typeof root._bokeh_onload_callbacks === \"undefined\" || force === true) {\n root._bokeh_onload_callbacks = [];\n root._bokeh_is_loading = undefined;\n }\n\n if (typeof (root._bokeh_timeout) === \"undefined\" || force === true) {\n root._bokeh_timeout = Date.now() + 5000;\n root._bokeh_failed_load = false;\n }\n\n function run_callbacks() {\n try {\n root._bokeh_onload_callbacks.forEach(function(callback) {\n if (callback != null)\n callback();\n });\n } finally {\n delete root._bokeh_onload_callbacks\n }\n console.debug(\"Bokeh: all callbacks have finished\");\n }\n\n function load_libs(css_urls, js_urls, js_modules, callback) {\n if (css_urls == null) css_urls = [];\n if (js_urls == null) js_urls = [];\n if (js_modules == null) js_modules = [];\n\n root._bokeh_onload_callbacks.push(callback);\n if (root._bokeh_is_loading > 0) {\n console.debug(\"Bokeh: BokehJS is being loaded, scheduling callback at\", now());\n return null;\n }\n if (js_urls.length === 0 && js_modules.length === 0) {\n run_callbacks();\n return null;\n }\n console.debug(\"Bokeh: BokehJS not loaded, scheduling load and callback at\", now());\n root._bokeh_is_loading = css_urls.length + js_urls.length + js_modules.length;\n\n function on_load() {\n root._bokeh_is_loading--;\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: all BokehJS libraries/stylesheets loaded\");\n run_callbacks()\n }\n }\n\n function on_error() {\n console.error(\"failed to load \" + url);\n }\n\n for (var i = 0; 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continue; }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n for (var i = 0; i < js_modules.length; i++) {\n var url = js_modules[i];\n if (skip.indexOf(url) >= 0) { on_load(); continue; }\n var element = document.createElement('script');\n element.onload = on_load;\n element.onerror = on_error;\n element.async = false;\n element.src = url;\n element.type = \"module\";\n console.debug(\"Bokeh: injecting script tag for BokehJS library: \", url);\n document.head.appendChild(element);\n }\n if (!js_urls.length && !js_modules.length) {\n on_load()\n }\n };\n\n function inject_raw_css(css) {\n const element = document.createElement(\"style\");\n element.appendChild(document.createTextNode(css));\n document.body.appendChild(element);\n }\n\n var js_urls = [\"https://unpkg.com/tabulator-tables@4.9.3/dist/js/tabulator.js\", \"https://unpkg.com/moment@2.27.0/moment.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-2.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-widgets-2.3.2.min.js\", \"https://cdn.bokeh.org/bokeh/release/bokeh-tables-2.3.2.min.js\", \"https://unpkg.com/@holoviz/panel@^0.11.3/dist/panel.min.js\"];\n var js_modules = [];\n var css_urls = [\"https://unpkg.com/tabulator-tables@4.9.3/dist/css/tabulator_simple.min.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/widgets.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/card.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/dataframe.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/alerts.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/loading.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/markdown.css\", \"https://unpkg.com/@holoviz/panel@0.11.3/dist/css/json.css\"];\n var inline_js = [\n function(Bokeh) {\n inject_raw_css(\"\\n .bk.pn-loading.arcs:before {\\n background-image: url(\\\"data:image/svg+xml;base64,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\\\")\\n }\\n \");\n },\n function(Bokeh) {\n Bokeh.set_log_level(\"info\");\n },\n function(Bokeh) {} // ensure no trailing comma for IE\n ];\n\n function run_inline_js() {\n if ((root.Bokeh !== undefined) || (force === true)) {\n for (var i = 0; i < inline_js.length; i++) {\n inline_js[i].call(root, root.Bokeh);\n }} else if (Date.now() < root._bokeh_timeout) {\n setTimeout(run_inline_js, 100);\n } else if (!root._bokeh_failed_load) {\n console.log(\"Bokeh: BokehJS failed to load within specified timeout.\");\n root._bokeh_failed_load = true;\n }\n }\n\n if (root._bokeh_is_loading === 0) {\n console.debug(\"Bokeh: BokehJS loaded, going straight to plotting\");\n run_inline_js();\n } else {\n load_libs(css_urls, js_urls, js_modules, function() {\n console.debug(\"Bokeh: BokehJS plotting callback run at\", now());\n run_inline_js();\n });\n }\n}(window));"
- },
- "metadata": {},
- "output_type": "display_data"
- },
- {
- "data": {
- "application/javascript": [
- "\n",
- "if ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n",
- " window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n",
- "}\n",
- "\n",
- "\n",
- " function JupyterCommManager() {\n",
- " }\n",
- "\n",
- " JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n",
- " if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
- " var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
- " comm_manager.register_target(comm_id, function(comm) {\n",
- " comm.on_msg(msg_handler);\n",
- " });\n",
- " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
- " window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n",
- " comm.onMsg = msg_handler;\n",
- " });\n",
- " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
- " google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n",
- " var messages = comm.messages[Symbol.asyncIterator]();\n",
- " function processIteratorResult(result) {\n",
- " var message = result.value;\n",
- " console.log(message)\n",
- " var content = {data: message.data, comm_id};\n",
- " var buffers = []\n",
- " for (var buffer of message.buffers || []) {\n",
- " buffers.push(new DataView(buffer))\n",
- " }\n",
- " var metadata = message.metadata || {};\n",
- " var msg = {content, buffers, metadata}\n",
- " msg_handler(msg);\n",
- " return messages.next().then(processIteratorResult);\n",
- " }\n",
- " return messages.next().then(processIteratorResult);\n",
- " })\n",
- " }\n",
- " }\n",
- "\n",
- " JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n",
- " if (comm_id in window.PyViz.comms) {\n",
- " return window.PyViz.comms[comm_id];\n",
- " } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n",
- " var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n",
- " var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n",
- " if (msg_handler) {\n",
- " comm.on_msg(msg_handler);\n",
- " }\n",
- " } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n",
- " var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n",
- " comm.open();\n",
- " if (msg_handler) {\n",
- " comm.onMsg = msg_handler;\n",
- " }\n",
- " } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n",
- " var comm_promise = google.colab.kernel.comms.open(comm_id)\n",
- " comm_promise.then((comm) => {\n",
- " window.PyViz.comms[comm_id] = comm;\n",
- " if (msg_handler) {\n",
- " var messages = comm.messages[Symbol.asyncIterator]();\n",
- " function processIteratorResult(result) {\n",
- " var message = result.value;\n",
- " var content = {data: message.data};\n",
- " var metadata = message.metadata || {comm_id};\n",
- " var msg = {content, metadata}\n",
- " msg_handler(msg);\n",
- " return messages.next().then(processIteratorResult);\n",
- " }\n",
- " return messages.next().then(processIteratorResult);\n",
- " }\n",
- " }) \n",
- " var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n",
- " return comm_promise.then((comm) => {\n",
- " comm.send(data, metadata, buffers, disposeOnDone);\n",
- " });\n",
- " };\n",
- " var comm = {\n",
- " send: sendClosure\n",
- " };\n",
- " }\n",
- " window.PyViz.comms[comm_id] = comm;\n",
- " return comm;\n",
- " }\n",
- " window.PyViz.comm_manager = new JupyterCommManager();\n",
- " \n",
- "\n",
- "\n",
- "var JS_MIME_TYPE = 'application/javascript';\n",
- "var HTML_MIME_TYPE = 'text/html';\n",
- "var EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\n",
- "var CLASS_NAME = 'output';\n",
- "\n",
- "/**\n",
- " * Render data to the DOM node\n",
- " */\n",
- "function render(props, node) {\n",
- " var div = document.createElement(\"div\");\n",
- " var script = document.createElement(\"script\");\n",
- " node.appendChild(div);\n",
- " node.appendChild(script);\n",
- "}\n",
- "\n",
- "/**\n",
- " * Handle when a new output is added\n",
- " */\n",
- "function handle_add_output(event, handle) {\n",
- " var output_area = handle.output_area;\n",
- " var output = handle.output;\n",
- " if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n",
- " return\n",
- " }\n",
- " var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n",
- " var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n",
- " if (id !== undefined) {\n",
- " var nchildren = toinsert.length;\n",
- " var html_node = toinsert[nchildren-1].children[0];\n",
- " html_node.innerHTML = output.data[HTML_MIME_TYPE];\n",
- " var scripts = [];\n",
- " var nodelist = html_node.querySelectorAll(\"script\");\n",
- " for (var i in nodelist) {\n",
- " if (nodelist.hasOwnProperty(i)) {\n",
- " scripts.push(nodelist[i])\n",
- " }\n",
- " }\n",
- "\n",
- " scripts.forEach( function (oldScript) {\n",
- " var newScript = document.createElement(\"script\");\n",
- " var attrs = [];\n",
- " var nodemap = oldScript.attributes;\n",
- " for (var j in nodemap) {\n",
- " if (nodemap.hasOwnProperty(j)) {\n",
- " attrs.push(nodemap[j])\n",
- " }\n",
- " }\n",
- " attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n",
- " newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n",
- " oldScript.parentNode.replaceChild(newScript, oldScript);\n",
- " });\n",
- " if (JS_MIME_TYPE in output.data) {\n",
- " toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n",
- " }\n",
- " output_area._hv_plot_id = id;\n",
- " if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n",
- " window.PyViz.plot_index[id] = Bokeh.index[id];\n",
- " } else {\n",
- " window.PyViz.plot_index[id] = null;\n",
- " }\n",
- " } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n",
- " var bk_div = document.createElement(\"div\");\n",
- " bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n",
- " var script_attrs = bk_div.children[0].attributes;\n",
- " for (var i = 0; i < script_attrs.length; i++) {\n",
- " toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n",
- " }\n",
- " // store reference to server id on output_area\n",
- " output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n",
- " }\n",
- "}\n",
- "\n",
- "/**\n",
- " * Handle when an output is cleared or removed\n",
- " */\n",
- "function handle_clear_output(event, handle) {\n",
- " var id = handle.cell.output_area._hv_plot_id;\n",
- " var server_id = handle.cell.output_area._bokeh_server_id;\n",
- " if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n",
- " var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n",
- " if (server_id !== null) {\n",
- " comm.send({event_type: 'server_delete', 'id': server_id});\n",
- " return;\n",
- " } else if (comm !== null) {\n",
- " comm.send({event_type: 'delete', 'id': id});\n",
- " }\n",
- " delete PyViz.plot_index[id];\n",
- " if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n",
- " var doc = window.Bokeh.index[id].model.document\n",
- " doc.clear();\n",
- " const i = window.Bokeh.documents.indexOf(doc);\n",
- " if (i > -1) {\n",
- " window.Bokeh.documents.splice(i, 1);\n",
- " }\n",
- " }\n",
- "}\n",
- "\n",
- "/**\n",
- " * Handle kernel restart event\n",
- " */\n",
- "function handle_kernel_cleanup(event, handle) {\n",
- " delete PyViz.comms[\"hv-extension-comm\"];\n",
- " window.PyViz.plot_index = {}\n",
- "}\n",
- "\n",
- "/**\n",
- " * Handle update_display_data messages\n",
- " */\n",
- "function handle_update_output(event, handle) {\n",
- " handle_clear_output(event, {cell: {output_area: handle.output_area}})\n",
- " handle_add_output(event, handle)\n",
- "}\n",
- "\n",
- "function register_renderer(events, OutputArea) {\n",
- " function append_mime(data, metadata, element) {\n",
- " // create a DOM node to render to\n",
- " var toinsert = this.create_output_subarea(\n",
- " metadata,\n",
- " CLASS_NAME,\n",
- " EXEC_MIME_TYPE\n",
- " );\n",
- " this.keyboard_manager.register_events(toinsert);\n",
- " // Render to node\n",
- " var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n",
- " render(props, toinsert[0]);\n",
- " element.append(toinsert);\n",
- " return toinsert\n",
- " }\n",
- "\n",
- " events.on('output_added.OutputArea', handle_add_output);\n",
- " events.on('output_updated.OutputArea', handle_update_output);\n",
- " events.on('clear_output.CodeCell', handle_clear_output);\n",
- " events.on('delete.Cell', handle_clear_output);\n",
- " events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n",
- "\n",
- " OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n",
- " safe: true,\n",
- " index: 0\n",
- " });\n",
- "}\n",
- "\n",
- "if (window.Jupyter !== undefined) {\n",
- " try {\n",
- " var events = require('base/js/events');\n",
- " var OutputArea = require('notebook/js/outputarea').OutputArea;\n",
- " if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n",
- " register_renderer(events, OutputArea);\n",
- " }\n",
- " } catch(err) {\n",
- " }\n",
- "}\n"
- ],
- "application/vnd.holoviews_load.v0+json": "\nif ((window.PyViz === undefined) || (window.PyViz instanceof HTMLElement)) {\n window.PyViz = {comms: {}, comm_status:{}, kernels:{}, receivers: {}, plot_index: []}\n}\n\n\n function JupyterCommManager() {\n }\n\n JupyterCommManager.prototype.register_target = function(plot_id, comm_id, msg_handler) {\n if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n comm_manager.register_target(comm_id, function(comm) {\n comm.on_msg(msg_handler);\n });\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n window.PyViz.kernels[plot_id].registerCommTarget(comm_id, function(comm) {\n comm.onMsg = msg_handler;\n });\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n google.colab.kernel.comms.registerTarget(comm_id, (comm) => {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n console.log(message)\n var content = {data: message.data, comm_id};\n var buffers = []\n for (var buffer of message.buffers || []) {\n buffers.push(new DataView(buffer))\n }\n var metadata = message.metadata || {};\n var msg = {content, buffers, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n })\n }\n }\n\n JupyterCommManager.prototype.get_client_comm = function(plot_id, comm_id, msg_handler) {\n if (comm_id in window.PyViz.comms) {\n return window.PyViz.comms[comm_id];\n } else if (window.comm_manager || ((window.Jupyter !== undefined) && (Jupyter.notebook.kernel != null))) {\n var comm_manager = window.comm_manager || Jupyter.notebook.kernel.comm_manager;\n var comm = comm_manager.new_comm(comm_id, {}, {}, {}, comm_id);\n if (msg_handler) {\n comm.on_msg(msg_handler);\n }\n } else if ((plot_id in window.PyViz.kernels) && (window.PyViz.kernels[plot_id])) {\n var comm = window.PyViz.kernels[plot_id].connectToComm(comm_id);\n comm.open();\n if (msg_handler) {\n comm.onMsg = msg_handler;\n }\n } else if (typeof google != 'undefined' && google.colab.kernel != null) {\n var comm_promise = google.colab.kernel.comms.open(comm_id)\n comm_promise.then((comm) => {\n window.PyViz.comms[comm_id] = comm;\n if (msg_handler) {\n var messages = comm.messages[Symbol.asyncIterator]();\n function processIteratorResult(result) {\n var message = result.value;\n var content = {data: message.data};\n var metadata = message.metadata || {comm_id};\n var msg = {content, metadata}\n msg_handler(msg);\n return messages.next().then(processIteratorResult);\n }\n return messages.next().then(processIteratorResult);\n }\n }) \n var sendClosure = (data, metadata, buffers, disposeOnDone) => {\n return comm_promise.then((comm) => {\n comm.send(data, metadata, buffers, disposeOnDone);\n });\n };\n var comm = {\n send: sendClosure\n };\n }\n window.PyViz.comms[comm_id] = comm;\n return comm;\n }\n window.PyViz.comm_manager = new JupyterCommManager();\n \n\n\nvar JS_MIME_TYPE = 'application/javascript';\nvar HTML_MIME_TYPE = 'text/html';\nvar EXEC_MIME_TYPE = 'application/vnd.holoviews_exec.v0+json';\nvar CLASS_NAME = 'output';\n\n/**\n * Render data to the DOM node\n */\nfunction render(props, node) {\n var div = document.createElement(\"div\");\n var script = document.createElement(\"script\");\n node.appendChild(div);\n node.appendChild(script);\n}\n\n/**\n * Handle when a new output is added\n */\nfunction handle_add_output(event, handle) {\n var output_area = handle.output_area;\n var output = handle.output;\n if ((output.data == undefined) || (!output.data.hasOwnProperty(EXEC_MIME_TYPE))) {\n return\n }\n var id = output.metadata[EXEC_MIME_TYPE][\"id\"];\n var toinsert = output_area.element.find(\".\" + CLASS_NAME.split(' ')[0]);\n if (id !== undefined) {\n var nchildren = toinsert.length;\n var html_node = toinsert[nchildren-1].children[0];\n html_node.innerHTML = output.data[HTML_MIME_TYPE];\n var scripts = [];\n var nodelist = html_node.querySelectorAll(\"script\");\n for (var i in nodelist) {\n if (nodelist.hasOwnProperty(i)) {\n scripts.push(nodelist[i])\n }\n }\n\n scripts.forEach( function (oldScript) {\n var newScript = document.createElement(\"script\");\n var attrs = [];\n var nodemap = oldScript.attributes;\n for (var j in nodemap) {\n if (nodemap.hasOwnProperty(j)) {\n attrs.push(nodemap[j])\n }\n }\n attrs.forEach(function(attr) { newScript.setAttribute(attr.name, attr.value) });\n newScript.appendChild(document.createTextNode(oldScript.innerHTML));\n oldScript.parentNode.replaceChild(newScript, oldScript);\n });\n if (JS_MIME_TYPE in output.data) {\n toinsert[nchildren-1].children[1].textContent = output.data[JS_MIME_TYPE];\n }\n output_area._hv_plot_id = id;\n if ((window.Bokeh !== undefined) && (id in Bokeh.index)) {\n window.PyViz.plot_index[id] = Bokeh.index[id];\n } else {\n window.PyViz.plot_index[id] = null;\n }\n } else if (output.metadata[EXEC_MIME_TYPE][\"server_id\"] !== undefined) {\n var bk_div = document.createElement(\"div\");\n bk_div.innerHTML = output.data[HTML_MIME_TYPE];\n var script_attrs = bk_div.children[0].attributes;\n for (var i = 0; i < script_attrs.length; i++) {\n toinsert[toinsert.length - 1].childNodes[1].setAttribute(script_attrs[i].name, script_attrs[i].value);\n }\n // store reference to server id on output_area\n output_area._bokeh_server_id = output.metadata[EXEC_MIME_TYPE][\"server_id\"];\n }\n}\n\n/**\n * Handle when an output is cleared or removed\n */\nfunction handle_clear_output(event, handle) {\n var id = handle.cell.output_area._hv_plot_id;\n var server_id = handle.cell.output_area._bokeh_server_id;\n if (((id === undefined) || !(id in PyViz.plot_index)) && (server_id !== undefined)) { return; }\n var comm = window.PyViz.comm_manager.get_client_comm(\"hv-extension-comm\", \"hv-extension-comm\", function () {});\n if (server_id !== null) {\n comm.send({event_type: 'server_delete', 'id': server_id});\n return;\n } else if (comm !== null) {\n comm.send({event_type: 'delete', 'id': id});\n }\n delete PyViz.plot_index[id];\n if ((window.Bokeh !== undefined) & (id in window.Bokeh.index)) {\n var doc = window.Bokeh.index[id].model.document\n doc.clear();\n const i = window.Bokeh.documents.indexOf(doc);\n if (i > -1) {\n window.Bokeh.documents.splice(i, 1);\n }\n }\n}\n\n/**\n * Handle kernel restart event\n */\nfunction handle_kernel_cleanup(event, handle) {\n delete PyViz.comms[\"hv-extension-comm\"];\n window.PyViz.plot_index = {}\n}\n\n/**\n * Handle update_display_data messages\n */\nfunction handle_update_output(event, handle) {\n handle_clear_output(event, {cell: {output_area: handle.output_area}})\n handle_add_output(event, handle)\n}\n\nfunction register_renderer(events, OutputArea) {\n function append_mime(data, metadata, element) {\n // create a DOM node to render to\n var toinsert = this.create_output_subarea(\n metadata,\n CLASS_NAME,\n EXEC_MIME_TYPE\n );\n this.keyboard_manager.register_events(toinsert);\n // Render to node\n var props = {data: data, metadata: metadata[EXEC_MIME_TYPE]};\n render(props, toinsert[0]);\n element.append(toinsert);\n return toinsert\n }\n\n events.on('output_added.OutputArea', handle_add_output);\n events.on('output_updated.OutputArea', handle_update_output);\n events.on('clear_output.CodeCell', handle_clear_output);\n events.on('delete.Cell', handle_clear_output);\n events.on('kernel_ready.Kernel', handle_kernel_cleanup);\n\n OutputArea.prototype.register_mime_type(EXEC_MIME_TYPE, append_mime, {\n safe: true,\n index: 0\n });\n}\n\nif (window.Jupyter !== undefined) {\n try {\n var events = require('base/js/events');\n var OutputArea = require('notebook/js/outputarea').OutputArea;\n if (OutputArea.prototype.mime_types().indexOf(EXEC_MIME_TYPE) == -1) {\n register_renderer(events, OutputArea);\n }\n } catch(err) {\n }\n}\n"
- },
- "metadata": {},
- "output_type": "display_data"
- }
- ],
+ "outputs": [],
"source": [
"import panel as pn\n",
"import param\n",
@@ -437,7 +26,7 @@
},
{
"cell_type": "code",
- "execution_count": 2,
+ "execution_count": null,
"id": "7b4685d7-698d-4a86-a0a4-a81d337bc9d7",
"metadata": {},
"outputs": [],
@@ -447,14 +36,14 @@
"#######################################################################################################\n",
"shaclBase = '/opt/dashboards/tools/shacl-1.3.2/bin/'\n",
"owl2vowlPath = '/opt/dashboards/tools/owl2vowl_0.3.7/owl2vowl.jar'\n",
- "storeBase = '../store/CCTP-SRSA-IP-20210831/'\n",
- "extractionGraph = '/opt/dashboards/tetras-lab-unl-demos/extraction-data-9.ttl'\n",
+ "storeBase = '/opt/data/store/le_petit_prince'\n",
+ "extractionGraph = '/opt/data/store/le_petit_prince/PetitPrince-1_factoid.ttl'\n",
"pane_width = 1300"
]
},
{
"cell_type": "code",
- "execution_count": 3,
+ "execution_count": null,
"id": "7b32d69a-52fb-4b9d-8cd9-5fb45c177284",
"metadata": {},
"outputs": [],
@@ -497,14 +86,14 @@
},
{
"cell_type": "code",
- "execution_count": 4,
+ "execution_count": null,
"id": "f66bfcd2-f2b9-4603-b1f2-d4fb643c8c3c",
"metadata": {},
"outputs": [],
"source": [
"g = Graph()\n",
"g.parse(extractionGraph)\n",
- "g.parse('system-ontology.ttl')\n",
+ "#g.parse('system-ontology.ttl')\n",
"\n",
"clearExecutionInstances = \"\"\"\n",
" PREFIX cts: <https://unsel.tetras-libre.fr/tenet/transduction-schemes#>\n",
@@ -533,7 +122,7 @@
"# On exécute ensuite seulement les règles de génération pour récupérer seulement le nécesaire à la visualisation\n",
"g.update(clearExecutionInstances)\n",
"g.update(addExecutionInstance.format('cts:generation'))\n",
- "with open('/opt/dashboards/static/extraction.ttl', 'w') as outfile:\n",
+ "with open('/opt/data/static/extraction.ttl', 'w') as outfile:\n",
" extractResult = shaclInfer('tmp.ttl', 'infer')\n",
" g.serialize(destination=\"tmp.ttl\", base=\"http://tmp\", format='turtle')\n",
" outfile.write(extractResult)\n",
@@ -554,14 +143,14 @@
" if p.returncode != 0:\n",
" print(\"Error in owl2vowl: \\n\\n\"+p.stdout.read().decode())\n",
" outFileName = ttlFilePath.split('/')[-1].replace('ttl','json')\n",
- " os.rename(outFileName, '/opt/dashboards/static/webvowl_1.1.7/data/'+outFileName)\n",
+ " os.rename(outFileName, '/opt/data/static/webvowl_1.1.7/data/'+outFileName)\n",
" \n",
- "owl2vowl('/opt/dashboards/static/extraction.ttl', importList=['system-ontology.ttl'])"
+ "owl2vowl('/opt/data/static/extraction.ttl')#, importList=['system-ontology.ttl'])"
]
},
{
"cell_type": "code",
- "execution_count": 5,
+ "execution_count": null,
"id": "40b54849-9333-4819-b953-6e816ffe474c",
"metadata": {},
"outputs": [],
@@ -789,7 +378,7 @@
},
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": null,
"id": "ca43f1f2-42ef-4355-a2e2-e27351a51b96",
"metadata": {},
"outputs": [],
@@ -1012,26 +601,10 @@
},
{
"cell_type": "code",
- "execution_count": 7,
+ "execution_count": null,
"id": "5d4ec56e-d0bb-44c8-975b-49d409b6b160",
"metadata": {},
- "outputs": [
- {
- "data": {
- "application/vnd.jupyter.widget-view+json": {
- "model_id": "f8ef621a0bea4f39bc03c09af31b11a4",
- "version_major": 2,
- "version_minor": 0
- },
- "text/plain": [
- "BokehModel(combine_events=True, render_bundle={'docs_json': {'d793ca72-54cc-4453-993c-58ac1620b69e': {'defs': …"
- ]
- },
- "execution_count": 7,
- "metadata": {},
- "output_type": "execute_result"
- }
- ],
+ "outputs": [],
"source": [
"#######################################################################################################\n",
"# Interface\n",
@@ -1063,7 +636,7 @@
" pn.Row(\n",
" pn.pane.HTML('<a href=\"https://unsel.tetras-lab.io/static/webvowl_1.1.7/index.html#extraction\" target=\"_blank\"><button type=\"button\" class=\"btn btn-outline-secondary btn-sm\">Visualiser le résultat d\\'extraction</button><a>'),\n",
" #pn.pane.HTML('<a href=\"https://unsel.tetras-lab.io/static/webvowl_1.1.7/index.html#extraction_SRSA-IP_STB_PHON_00100\" target=\"_blank\"><button type=\"button\" class=\"btn btn-outline-secondary btn-sm\">Visualiser l\\'extraction de SRSA-IP_STB_PHON_00100</button><a>'), \n",
- " pn.widgets.FileDownload(file='/opt/dashboards/static/extraction.ttl', embed=True)\n",
+ " pn.widgets.FileDownload(file='/opt/data/static/extraction.ttl', embed=True)\n",
" ),\n",
" pn.layout.Divider(), \n",
" pn.Card( \n",
@@ -1091,7 +664,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},