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+++ b/tetras-mars-web-app-advanced.ipynb
@@ -0,0 +1,1105 @@
+{
+ "cells": [
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "160ab8ab-091e-4b00-b63a-c3746c71c540",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import panel as pn\n",
+ "import param\n",
+ "from glob import glob\n",
+ "import base64\n",
+ "import re\n",
+ "import requests\n",
+ "from subprocess import Popen, PIPE, STDOUT\n",
+ "import html\n",
+ "from cairosvg import svg2png\n",
+ "import graphviz\n",
+ "from rdflib import Graph, Namespace, URIRef\n",
+ "import os\n",
+ "from collections import OrderedDict\n",
+ "from urllib.request import urlopen\n",
+ "import uuid\n",
+ "import shutil\n",
+ "from SPARQLWrapper import SPARQLWrapper, JSON\n",
+ "\n",
+ "pn.extension(comms='ipywidgets')"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "7b4685d7-698d-4a86-a0a4-a81d337bc9d7",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "#######################################################################################################\n",
+ "# Parameters\n",
+ "#######################################################################################################\n",
+ "shaclBase = '/opt/dashboards/tools/shacl-1.3.2/bin/'\n",
+ "owl2vowlPath = '/opt/dashboards/tools/owl2vowl_0.3.7/owl2vowl.jar'\n",
+ "storeBase = '../store/CCTP-SRSA-IP-20210831/'\n",
+ "extractionGraph = '/opt/dashboards/tetras-lab-unl-demos/work_graph.ttl' # -- old --- extractionGraph = '/opt/dashboards/tetras-lab-unl-demos/extraction-data-9.ttl'\n",
+ "workDir = 'work-data/'\n",
+ "webvowlData = '/opt/webvowl'\n",
+ "pane_width = 1250\n",
+ "\n",
+ "# Fuseki\n",
+ "fusekiBase = \"https://fuseki.unsel.tetras-lab.io/unsel/\"\n",
+ "sparqlQuery = SPARQLWrapper(fusekiBase+'query',returnFormat=JSON)\n",
+ "sparqlUpdate = SPARQLWrapper(fusekiBase+'update')\n",
+ "sparqlUpdate.method = 'POST'\n",
+ "sparqlUpdate.setCredentials(\"admin\", \"wezW3EHTH4LfEdaKtnC9errLH1YwVXssIO6DUfnjGAHuBApSfvDb4R1uDX5JmSVK\")\n",
+ "sparqlUpdate.setQuery(\"DELETE {?s ?p ?o} WHERE {?s ?p ?o}\")\n",
+ "sparqlLog = sparqlUpdate.query()"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "2c41c319-4beb-4a85-a232-61a12d00cdbf",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "#######################################################################################################\n",
+ "# UNL tools functions\n",
+ "#######################################################################################################\n",
+ "\n",
+ "def unl2stuff(unlFilePath, jarPath, outPrefix, outType):\n",
+ " # Run java parser\n",
+ " cmd = ['java', '-jar', jarPath,\n",
+ " '--input-file', unlFilePath,\n",
+ " '--output-file', outPrefix,\n",
+ " '--output-type', outType]\n",
+ " with Popen(cmd, stdout=PIPE, stderr=STDOUT) as p:\n",
+ " p.wait()\n",
+ " p.stdout.flush()\n",
+ " if p.returncode != 0:\n",
+ " print(\"Error in unl2rdf: \\n\\n\"+p.stdout.read().decode())\n",
+ " print('UNL;')\n",
+ " #print(text)\n",
+ " \n",
+ "def unl2dotWeb(unldata) :\n",
+ " data={'unl': unldata, 'outputs':['dot', 'svg', 'rdf']}\n",
+ " try:\n",
+ " r = requests.post('https://unl.demo.tetras-libre.fr/unl2rdf', data=data)\n",
+ " except Exception as e:\n",
+ " return 'Error calling https://unl.demo.tetras-libre.fr/unl2rdf : \"{error}\"'.format(error=e)\n",
+ " html=r.text\n",
+ " # On utilise une regex au lieu de parser le html car ce dernier est mal formé\n",
+ " regexSvg = re.compile('<svg.*svg>',re.MULTILINE|re.DOTALL)\n",
+ " regexRdf = re.compile(\"<code id='rdf' class='collapse show'>(.*?)</code>\",re.MULTILINE|re.DOTALL)\n",
+ " try : \n",
+ " svg = regexSvg.search(html).group()\n",
+ " rdf = regexRdf.search(html).group(1) \n",
+ " except Exception as e :\n",
+ " svg = ''\n",
+ " rdf = ''\n",
+ " print(e)\n",
+ " return(svg, rdf)\n",
+ "\n",
+ "def zipdir(path, ziph):\n",
+ " # ziph is zipfile handle\n",
+ " for root, dirs, files in os.walk(path):\n",
+ " for file in files:\n",
+ " if not('orig' in root):\n",
+ " ziph.write(os.path.join(root, file), \n",
+ " os.path.relpath(os.path.join(root, file), \n",
+ " os.path.join(path, '..')))\n",
+ "\n",
+ "def addBaseUri(rdfStr):\n",
+ " regexBaseUri = re.compile(\"http://rdf-unl.org.*?sentence.*?ontology\")\n",
+ " baseUri = regexBaseUri.search(rdfStr).group()\n",
+ " rdfStr = \"# baseURI: \"+baseUri+\"\\n\"+rdfStr\n",
+ " return(rdfStr)\n",
+ "\n",
+ "def postEditRdf(rdfPath, frStr, enStr):\n",
+ " textID = rdfPath.rsplit('/', 1)[0]\n",
+ " newPrefix = \"http://unsel.rdf-unl.org/\"+textID\n",
+ " with open(rdfPath,'r') as rdfFile :\n",
+ " rdfStr = rdfFile.read()\n",
+ " rdfFile.close()\n",
+ " regexBaseUri = re.compile(\"http://rdf-unl.org.*?sentence.*?ontology\")\n",
+ " rdfStr = rdfStr.replace('rdfs:label \"TBD : phrase en langue naturelle\"@inv ;', \n",
+ " '<https://unl.tetras-libre.fr/rdf/schema#has_id> \"{}\" ;\\n'.format(textID.split('/')[-2])+'rdfs:label \"\"\"{}\"\"\"@fr ;\\n'.format(frStr)+' rdfs:label \"\"\"{}\"\"\"@en ;\\n'.format(enStr))\n",
+ " baseUri = regexBaseUri.search(rdfStr).group()\n",
+ " oldPrefix = baseUri.rsplit('/', 1)[0]\n",
+ " rdfStr = rdfStr.replace(oldPrefix+'#ontology', newPrefix.rsplit('/', 1)[0]+'#ontology') \n",
+ " rdfStr = rdfStr.replace(oldPrefix+'#', \"http://unsel.rdf-unl.org/uw_lexeme#\")\n",
+ " rdfStr = \"# baseURI: \"+baseUri+\"\\n @prefix : <\"+baseUri.replace(\"ontology\",\"\")+\"> .\\n\"+rdfStr\n",
+ " rdfStr = rdfStr.replace(oldPrefix, newPrefix)\n",
+ " with open(rdfPath,'w') as rdfFile :\n",
+ " rdfStr = rdfFile.write(rdfStr)\n",
+ " rdfFile.close()\n",
+ "\n",
+ "def replaceInplace(filePath, searchText, replaceText):\n",
+ " #read input file\n",
+ " fin = open(filePath, \"rt\")\n",
+ " #read file contents to string\n",
+ " data = fin.read()\n",
+ " #replace all occurrences of the required string\n",
+ " data = data.replace(searchText, replaceText)\n",
+ " #close the input file\n",
+ " fin.close()\n",
+ " #open the input file in write mode\n",
+ " fin = open(filePath, \"wt\")\n",
+ " #overrite the input file with the resulting data\n",
+ " fin.write(data)\n",
+ " #close the file\n",
+ " fin.close()\n",
+ " \n",
+ "def createStoreDirectory(unlStr, srsaRef):\n",
+ " storeDir = storeBase+srsaRef+\"/current/\"\n",
+ " regexFr = re.compile(\"{org:fr}\\n(.*?)\\n{/org}\",re.MULTILINE|re.DOTALL)\n",
+ " try:\n",
+ " frStr = regexFr.search(unlStr).group(1)\n",
+ " except AttributeError:\n",
+ " frStr = '' \n",
+ " enStr = ''\n",
+ " # Create a directory named after 'Référence'\n",
+ " try :\n",
+ " os.makedirs(storeDir)\n",
+ " except FileExistsError:\n",
+ " pass\n",
+ " # Add english translation to unl code\n",
+ " unlStr = unlStr.replace(\"{/org}\", \"{{/org}}\\n{{en}}\\n{enStr}\\n{{/en}}\".format(enStr=enStr)) \n",
+ " # Write UNL code to a file\n",
+ " with open(storeDir+srsaRef+'.unl','w') as unlFile:\n",
+ " unlFile.write(unlStr)\n",
+ " os.chmod(storeDir+srsaRef+'.unl',0o766)\n",
+ " # Send UNL code to https://unl.demo.tetras-libre.fr/unl2rdf to get SVG and RDF\n",
+ " #svg, rdf = unl2dotWeb(unlStr)\n",
+ " \n",
+ " # Use unltools jar to create ttl and dot file from unl \n",
+ " unl2stuff(storeDir+srsaRef+'.unl', '/opt/dashboards/tools/unl2rdf-app-0.9.jar', storeDir+srsaRef, 'rdf')\n",
+ " postEditRdf(storeDir+srsaRef+'.ttl', frStr, enStr)\n",
+ " unl2stuff(storeDir+srsaRef+'.unl', '/opt/dashboards/tools/unl2rdf-app-0.9.jar', storeDir+srsaRef, 'dot')\n",
+ " \n",
+ " # Generate svg and png\n",
+ " graphviz.render('dot', 'svg', storeDir+srsaRef+'.dot') \n",
+ " graphviz.render('dot', 'png', storeDir+srsaRef+'.dot')\n",
+ " # Rename generated svg and png so they are not named like file.dot.svg\n",
+ " svgList = glob(storeDir+srsaRef+\"*.svg\")\n",
+ " for svgPath in svgList:\n",
+ " svgNewPath = svgPath.replace(\".dot\",\"\")\n",
+ " os.rename(svgPath, svgNewPath)\n",
+ " pngList = glob(storeDir+srsaRef+\"*.png\")\n",
+ " for pngPath in pngList:\n",
+ " pngNewPath = pngPath.replace(\".dot\",\"\")\n",
+ " os.rename(pngPath, pngNewPath)\n",
+ " \n",
+ " # Add full text sentences to the svg\n",
+ " replaceInplace(storeDir+srsaRef+'.svg', '</svg>','''<text x=\"0\" y=\"-40\">fr : {fr}</text>\n",
+ "<text x=\"0\" y=\"-20\">en : {en}</text>\n",
+ "</svg>'''.format(fr=frStr, en=enStr))\n",
+ " \n",
+ " #svgWithTxt = svg.replace('</svg>','''<text x=\"0\" y=\"-40\">fr : {fr}</text>\n",
+ "#<text x=\"0\" y=\"-20\">en : {en}</text>\n",
+ "#</svg>'''.format(fr=frStr, en=enStr)) \n",
+ " \n",
+ " #with open(storeDir+srsaRef+'.svg','w') as svgFile:\n",
+ " # svgFile.write(svgWithTxt)\n",
+ " #os.chmod(storeDir+srsaRef+'.svg',0o766)\n",
+ " #with open(storeDir+srsaRef+'.ttl','w') as rdfFile:\n",
+ " # rdfFile.write(rdf)\n",
+ " os.chmod(storeDir+srsaRef+'.ttl',0o766)\n",
+ " os.chmod(storeDir+srsaRef+'.svg',0o766)\n",
+ " os.chmod(storeDir+srsaRef+'.png',0o766)\n",
+ " os.chmod(storeDir+srsaRef+'.dot',0o766)\n",
+ " os.chmod(storeDir+srsaRef+'.unl',0o766)\n",
+ "\n",
+ " # Convert svg to png and write to a file\n",
+ " #try:\n",
+ " # svg2png(bytestring=svgWithTxt, write_to=storeDir+srsaRef+'.png')\n",
+ " #except :\n",
+ " # pass\n",
+ " shutil.copytree(storeDir, storeBase+srsaRef+\"/orig/\") \n",
+ " with open(storeBase+srsaRef+\"/current/\"+srsaRef+'.comments','w') as commentFile:\n",
+ " commentFile.write(\"[David] : Saisissez vos commentaires en commençant par votre nom, n'oubliez pas d'enregistrer : \")\n",
+ " os.chmod(storeBase+srsaRef+\"/current/\"+srsaRef+'.comments',0o766)\n",
+ "\n",
+ "def writeUnlFiles(unlStr, storePrefix):\n",
+ " srsaRef = selectDir.value\n",
+ " with open(storePrefix+'.unl','w') as unlFile:\n",
+ " unlFile.write(unlStr)\n",
+ " unlFile.close() \n",
+ " \n",
+ "def createFolderFromUnselInter(srsaRef):\n",
+ " url = 'https://lingwarium.org/UNseL-inter/GrapheUNL.txt'\n",
+ " unlStr = urlopen(url).read().decode('utf-8').replace('[P:1]','').replace('[/P]','')\n",
+ " createStoreDirectory(unlStr, srsaRef)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "7b32d69a-52fb-4b9d-8cd9-5fb45c177284",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "#######################################################################################################\n",
+ "# Extraction\n",
+ "#######################################################################################################\n",
+ "\n",
+ "def run_command(cmd):\n",
+ " with Popen(cmd, stdout=PIPE, stderr=PIPE, universal_newlines=True) as p:\n",
+ " p.poll()\n",
+ " p.stdout.flush()\n",
+ " p.stderr.flush()\n",
+ " stdout, stderr = p.communicate()\n",
+ " return p.returncode, stdout, stderr\n",
+ "\n",
+ "# Run SHACL infer sh script. mode argument can take the values 'infer' or 'validate'\n",
+ "def shaclInfer(ttlPath, mode, ttlRulesPath = ''):\n",
+ " if ttlRulesPath == '':\n",
+ " cmd = ['sh', shaclBase+'/shacl'+mode+'.sh', '-datafile', ttlPath]\n",
+ " else:\n",
+ " cmd = ['sh', shaclBase+'/shacl'+mode+'.sh', '-datafile', ttlPath, '-shapesfile', ttlRulesPath]\n",
+ " #cmd = ' '.join(cmd) \n",
+ " #!{cmd}\n",
+ " code, out, err = run_command(cmd)\n",
+ " if code != 0:\n",
+ " print(\"Error in SHACL script: \\n\\n\"+err)\n",
+ " else:\n",
+ " return(out)\n",
+ " \n",
+ "def export_result(g):\n",
+ " export_file = 'output.ttl'\n",
+ " g.serialize(destination=export_file, base=base_uri, format='turtle')\n",
+ " \n",
+ "#shaclInfer('/opt/dashboards/tetras-lab-unl-demos/demo-cctp-40.ttl', 'infer')\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "5c7164d7-c074-4aa3-9776-0cc5cc8f18f7",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "#==============================================================================\n",
+ "# TENET: prepare work data\n",
+ "#------------------------------------------------------------------------------\n",
+ "# Prepare work data for extraction processing. \n",
+ "#==============================================================================\n",
+ "\n",
+ "#==============================================================================\n",
+ "# Parameters\n",
+ "#==============================================================================\n",
+ "\n",
+ "# Working directories\n",
+ "CONFIG_DIR = \"/opt/dashboards/tools/tenet/config/\"\n",
+ "FRAME_DIR = \"/opt/dashboards/tools/tenet/frame/\"\n",
+ "CORPUS_DIR = storeBase\n",
+ "OUTPUT_DIR = \"output/\"\n",
+ "\n",
+ "# Config Definition\n",
+ "TURTLE_SUFFIX = \".ttl\"\n",
+ "frame_file = \"system-ontology.ttl\"\n",
+ "dash_file = \"dash-data-shapes.ttl\" # data from \"http://datashapes.org/dash.ttl\"\n",
+ "schema_file = \"unl-rdf-schema.ttl\"\n",
+ "semantic_net_file = \"semantic-net.ttl\"\n",
+ "cts_file = \"transduction-schemes.ttl\"\n",
+ "c_param_file = \"config-parameters.ttl\"\n",
+ "\n",
+ "# Dev Tests\n",
+ "base_uri = \"https://unsel.tetras-libre.fr/tenet/working\"\n",
+ "\n",
+ "#==============================================================================\n",
+ "# Graph Initialization\n",
+ "#==============================================================================\n",
+ " \n",
+ "def load_config(work_graph): \n",
+ " file_ref = CONFIG_DIR + schema_file\n",
+ " work_graph.parse(file_ref)\n",
+ " \n",
+ " file_ref = CONFIG_DIR + semantic_net_file\n",
+ " work_graph.parse(file_ref)\n",
+ " \n",
+ " file_ref = CONFIG_DIR + dash_file\n",
+ " work_graph.parse(file_ref)\n",
+ " \n",
+ " file_ref = CONFIG_DIR + c_param_file\n",
+ " work_graph.parse(file_ref)\n",
+ "\n",
+ "def load_frame(work_graph):\n",
+ " file_ref = FRAME_DIR + frame_file\n",
+ " work_graph.parse(file_ref)\n",
+ "\n",
+ "#def define_namespace(work_graph):\n",
+ "# print(\"-- Namespace Definition:\")\n",
+ "# \n",
+ "# sys_uri = \"https://unsel.tetras-libre.fr/tenet/frame/system-ontology/\"\n",
+ "# concept_classes = [\"agent\"]\n",
+ "# for concept in concept_classes:\n",
+ "# new_prefix = \"sys-\" + concept\n",
+ "# new_uri = URIRef(sys_uri + concept + '#') \n",
+ "# work_graph.namespace_manager.bind(new_prefix, new_uri)\n",
+ "# print(\"----- \" + new_prefix + \": \" + new_uri)\n",
+ "# print(list(work_graph.namespace_manager.namespaces())) \n",
+ " \n",
+ "def load_sentences(work_graph, corpus):\n",
+ " target_ref = CORPUS_DIR + corpus + '/current/*.ttl'\n",
+ " for file_ref in glob(target_ref):\n",
+ " if 'factoid' not in file_ref :\n",
+ " # Patch for new UWs with for instance .§A in restrictions\n",
+ " \n",
+ " work_graph.parse(file_ref)\n",
+ " \n",
+ "def load_cts(work_graph): \n",
+ " file_ref = CONFIG_DIR + cts_file\n",
+ " work_graph.parse(file_ref)\n",
+ " \n",
+ "#==============================================================================\n",
+ "# Result (export)\n",
+ "#==============================================================================\n",
+ " \n",
+ "def export_result(work_graph, export_ref, export_file): \n",
+ " work_graph.serialize(destination=export_file, \n",
+ " base=base_uri + '/' + export_ref, \n",
+ " format='turtle')\n",
+ " \n",
+ " \n",
+ "def finalize_export_file(export_file):\n",
+ " \"\"\" finalize the export file by adding some useful prefixes \"\"\"\n",
+ " \n",
+ " with open(export_file, \"rt\") as file:\n",
+ " x = file.read()\n",
+ " \n",
+ " with open(export_file, \"wt\") as file:\n",
+ " x = x.replace(\n",
+ " \"@prefix sys: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/> .\",\n",
+ " \"\"\"\n",
+ " @prefix sys: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/> .\n",
+ " @prefix sys-class: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/class/> .\n",
+ " @prefix sys-property: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/property/> .\n",
+ " @prefix sys-relation: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/relation/> .\n",
+ " @prefix sys-Event: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/Event#> .\n",
+ " @prefix sys-event: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/eventObjectProperty#> .\n",
+ " @prefix sys-State_Property: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/State_Property#> .\n",
+ " @prefix sys-stateProperty: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/statePropertyObjectProperty#> .\n",
+ " @prefix sys-abstract_thing: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/abstract_thing#> .\n",
+ " @prefix sys-action_verb: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/action_verb#> .\n",
+ " @prefix sys-agent: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/agent#> .\n",
+ " @prefix sys-attributive_verb: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/attributive_verb#> .\n",
+ " @prefix sys-component: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/component#> .\n",
+ " @prefix sys-message: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/message#> .\n",
+ " @prefix sys-place: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/place#> .\n",
+ " \"\"\")\n",
+ " file.write(x)\n",
+ " \n",
+ "#==============================================================================\n",
+ "# Main Function\n",
+ "#==============================================================================\n",
+ " \n",
+ "def createTenetGraph(corpus):\n",
+ " try: \n",
+ " work_graph = Graph()\n",
+ " load_config(work_graph) \n",
+ " load_frame(work_graph) \n",
+ " #define_namespace(work_graph)\n",
+ " load_cts(work_graph)\n",
+ " load_sentences(work_graph, corpus)\n",
+ " output_file = extractionGraph\n",
+ " export_result(work_graph, corpus, output_file)\n",
+ " finalize_export_file(output_file)\n",
+ " return(work_graph)\n",
+ " except Exception as e :\n",
+ " print(\"!!! An exception occurred importing rdf graphs for extraction !!!\\n\"+str(e)) \n",
+ " \n",
+ "def addSentenceInTenetGraph(work_graph, sentence_ref):\n",
+ " \"\"\" TODO: add a sentence to work_graph \"\"\"\n",
+ " pass\n",
+ " \n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "f66bfcd2-f2b9-4603-b1f2-d4fb643c8c3c",
+ "metadata": {
+ "tags": []
+ },
+ "outputs": [],
+ "source": [
+ "clearExecutionInstances = \"\"\"\n",
+ " PREFIX cts: <https://unsel.tetras-libre.fr/tenet/transduction-schemes#>\n",
+ " PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n",
+ " PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n",
+ "\n",
+ " DELETE {?x rdf:type ?c}\n",
+ " WHERE {\n",
+ " ?c rdfs:subClassOf* cts:Transduction_Schemes .\n",
+ " ?x rdf:type ?c .\n",
+ " }\n",
+ "\"\"\"\n",
+ "\n",
+ "addExecutionInstance = \"\"\"\n",
+ " PREFIX cts: <https://unsel.tetras-libre.fr/tenet/transduction-schemes#>\n",
+ " PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n",
+ " PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n",
+ "\n",
+ " INSERT DATA {{<exec_instance> rdf:type {}}}\n",
+ "\"\"\"\n",
+ "\n",
+ "def owl2vowl(ttlFilePath, importList=[]):\n",
+ " # Run java parser\n",
+ " if importList == []:\n",
+ " cmd = ['java', '-jar', owl2vowlPath,\n",
+ " '-file', ttlFilePath] \n",
+ " else:\n",
+ " cmd = ['java', '-jar', owl2vowlPath,\n",
+ " '-file', ttlFilePath,\n",
+ " '-dependencies'] + importList \n",
+ " with Popen(cmd, stdout=PIPE, stderr=STDOUT) as p:\n",
+ " p.wait()\n",
+ " p.stdout.flush()\n",
+ " if p.returncode != 0:\n",
+ " print(\"Error in owl2vowl: \\n\\n\"+p.stdout.read().decode())\n",
+ " outFileName = ttlFilePath.split('/')[-1].replace('ttl','json')\n",
+ " os.rename(outFileName, '/opt/webvowl/'+outFileName)\n",
+ " \n",
+ "def applyInferStep(uuidStr, graph, step):\n",
+ " step_ref = \"cts:\" + step\n",
+ " dest_file = workDir + uuidStr + '-' + step + \".ttl\"\n",
+ " base_ref = \"http://\" + uuidStr + '/' + step\n",
+ " graph.update(clearExecutionInstances)\n",
+ " graph.update(addExecutionInstance.format(step_ref)) # ex. : step = 'cts:generation'\n",
+ " graph.serialize(destination=dest_file, base=base_ref, format='turtle') # serialize graph before inference\n",
+ " work_file = dest_file\n",
+ " inferResult = shaclInfer(work_file, 'infer') # apply SHACL inference\n",
+ " graph.parse(data=inferResult) # update graph with inference\n",
+ " #graph.serialize(destination=dest_file, base=base_ref, format='turtle') # serialize graph after inference\n",
+ " return graph, inferResult"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "40b54849-9333-4819-b953-6e816ffe474c",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "#######################################################################################################\n",
+ "# Validation\n",
+ "#######################################################################################################\n",
+ "def pyshaclValidate():\n",
+ " from pyshacl import validate\n",
+ " data_file = open('tmp.ttl').read()\n",
+ " shapes_file = open('test-shacl-construct.shapes-order.ttl').read()\n",
+ " conforms, v_graph, v_text = validate(data_file, shacl_graph=shapes_file)\n",
+ " print(conforms)\n",
+ " print(v_graph)\n",
+ " print(v_text)\n",
+ " \n",
+ "def loadFactoids(directory):\n",
+ " ttlList = glob(directory+\"/*/current/*_factoid.ttl\")\n",
+ " g = Graph()\n",
+ " for ttl in ttlList :\n",
+ " g.parse(ttl)\n",
+ " g.parse('/opt/dashboards/tools/tenet/frame/system-ontology.ttl')\n",
+ " return(g)\n",
+ "\n",
+ "def loadSentences(directory):\n",
+ " ttlList = glob(directory+\"/*/current/*.ttl\")\n",
+ " g = Graph()\n",
+ " for ttl in ttlList :\n",
+ " if 'factoid' not in ttl:\n",
+ " g.parse(ttl)\n",
+ " g.parse('/opt/dashboards/tools/tenet/config/unl-rdf-schema.ttl')\n",
+ " return(g)\n",
+ "\n",
+ "possibleUnderspecificationQuery ='''\n",
+ "PREFIX owl: <http://www.w3.org/2002/07/owl#>\n",
+ "PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n",
+ "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n",
+ "PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>\n",
+ "PREFIX unl: <https://unl.tetras-libre.fr/rdf/schema#>\n",
+ "PREFIX net: <https://unsel.tetras-libre.fr/tenet/semantic-net#>\n",
+ "PREFIX cprm: <https://unsel.tetras-libre.fr/tenet/config/parameters#>\n",
+ "PREFIX req: <https://unsel.tetras-libre.fr/tenet/frame/requirement-ontology#>\n",
+ "PREFIX sys: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/>\n",
+ "PREFIX fprm: <https://unsel.tetras-libre.fr/tenet/frame/parameters#>\n",
+ "\n",
+ "SELECT ?thisId (CONCAT('Parle-t-on bien de tous les \"', ?entityLabel, '\" possibles ? (', ?subEntities, ')' ) AS ?message)\n",
+ "WHERE {\n",
+ "FILTER(?count>1)\n",
+ "{SELECT ?this ?thisId ?entityLabel (GROUP_CONCAT(?subEntityLabel;SEPARATOR=\", \") AS ?subEntities) (COUNT(?subEntityLabel) AS ?count)\n",
+ "WHERE {\n",
+ "\t?subEntity rdfs:subClassOf ?entity ; rdfs:label ?subEntityLabel .\n",
+ "\t{SELECT ?this ?entity ?thisId ?entityLabel\n",
+ "\tWHERE {\n",
+ " BIND(\"##ID##\" AS ?thisId)\n",
+ " \t?this a unl:UNL_Sentence ; unl:has_id ?thisId .\n",
+ "\t\t?entity sys:from_structure ?this ; \n",
+ "\t\t\trdfs:subClassOf+ sys:Structure ;\n",
+ "\t\t\trdfs:label ?entityLabel .\n",
+ "\t\t FILTER (\n",
+ " \t\t!EXISTS {?subEntity1 rdfs:subClassOf ?entity; sys:from_structure ?this}\n",
+ " )\n",
+ "\t}} \n",
+ "}\n",
+ "GROUP BY ?this ?thisId ?entityLabel }\n",
+ "}\n",
+ "'''\n",
+ "\n",
+ "possibleClassEquivalenceQuery = '''PREFIX owl: <http://www.w3.org/2002/07/owl#>\n",
+ "PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n",
+ "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n",
+ "PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>\n",
+ "PREFIX unl: <https://unl.tetras-libre.fr/rdf/schema#>\n",
+ "PREFIX net: <https://unsel.tetras-libre.fr/tenet/semantic-net#>\n",
+ "PREFIX cprm: <https://unsel.tetras-libre.fr/tenet/config/parameters#>\n",
+ "PREFIX req: <https://unsel.tetras-libre.fr/tenet/frame/requirement-ontology#>\n",
+ "PREFIX sys: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/>\n",
+ "PREFIX fprm: <https://unsel.tetras-libre.fr/tenet/frame/parameters#>\n",
+ "\n",
+ "SELECT (CONCAT(?messageTMP, ?sentenceList, ')') AS ?message) ?sentenceList\n",
+ "WHERE {\n",
+ "FILTER(regex(?sentenceList, \"##ID##\" ))\n",
+ "{SELECT ?messageTMP (GROUP_CONCAT(?sentenceId; SEPARATOR=\", \") AS ?sentenceList)\n",
+ "WHERE {\t\n",
+ "\tSELECT DISTINCT ?messageTMP ?sentenceId\n",
+ "\tWHERE {\n",
+ "\t\tFILTER (?count = 1)\n",
+ "\t\t?subEntity rdfs:subClassOf ?this ; rdfs:label ?subEntityLabel ; sys:from_structure ?subEntitySentence .\n",
+ "\t\t?this rdfs:label ?thisLabel ; sys:from_structure ?thisSentence .\n",
+ " \tBIND(CONCAT('\"', ?subEntityLabel, '\" est la seule sous classe de \"', ?thisLabel, '\". Ces classes sont-elles équivalentes ? <br/>(voir les exigences ') AS ?messageTMP)\n",
+ " \t\t{\n",
+ " ?thisSentence unl:has_id ?thisSentenceId .\n",
+ "\t\t\tBIND (?thisSentenceId AS ?sentenceId)} \n",
+ "\t\tUNION \n",
+ "\t\t\t{?subEntitySentence unl:has_id ?subEntitySentenceId .\n",
+ "\t\t\tBIND (?subEntitySentenceId AS ?sentenceId)}\n",
+ "\tFILTER(NOT EXISTS {?subEntity sys:from_structure ?thisSentence})\n",
+ "\t\t{SELECT ?this (COUNT(?subClass) AS ?count)\n",
+ "\t\tWHERE {\n",
+ " \t \t?this rdfs:subClassOf+ sys:Structure .\n",
+ "\t\t\t\t?subClass rdfs:subClassOf ?this\n",
+ "\t\t} GROUP BY ?this }\n",
+ "\t} ORDER BY ?sentenceId\n",
+ "} GROUP BY ?messageTMP }\n",
+ "}'''\n",
+ "\n",
+ "unfeaturedDomainOrRangeQuery = '''PREFIX owl: <http://www.w3.org/2002/07/owl#>\n",
+ "PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n",
+ "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n",
+ "PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>\n",
+ "PREFIX unl: <https://unl.tetras-libre.fr/rdf/schema#>\n",
+ "PREFIX net: <https://unsel.tetras-libre.fr/tenet/semantic-net#>\n",
+ "PREFIX cprm: <https://unsel.tetras-libre.fr/tenet/config/parameters#>\n",
+ "PREFIX req: <https://unsel.tetras-libre.fr/tenet/frame/requirement-ontology#>\n",
+ "PREFIX sys: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/>\n",
+ "PREFIX fprm: <https://unsel.tetras-libre.fr/tenet/frame/parameters#>\n",
+ "\n",
+ "SELECT ?sentenceId (CONCAT(?messageTMP, GROUP_CONCAT(?featureLabel ; SEPARATOR=', ')) AS ?message)\n",
+ "WHERE {\n",
+ " SELECT DISTINCT ?sentenceId ?featureLabel (CONCAT( 'Dans cette exigence, \"', ?unfeaturedLabel, '\" pourrait être précisé par : ') AS ?messageTMP)\n",
+ " WHERE {\n",
+ " {\n",
+ " ?p rdfs:subPropertyOf+ sys:Property ;\n",
+ " rdfs:domain ?featured ; \n",
+ " rdfs:range ?unfeatured .\n",
+ " }\n",
+ " UNION\n",
+ " {\n",
+ " ?p rdfs:subPropertyOf+ sys:Property ;\n",
+ " rdfs:domain ?unfeatured ; \n",
+ " rdfs:range ?featured .\n",
+ " }\n",
+ " #?p rdfs:label ?pLabel .\n",
+ " ?featured sys:has_feature ?feature .\n",
+ " FILTER(NOT EXISTS {\n",
+ " ?unfeatured sys:has_feature ?feature\n",
+ " })\n",
+ " ?featuredInstance a ?featured ; sys:from_structure ?sentence.\n",
+ " ?unfeaturedInstance a ?unfeatured ; sys:from_structure ?sentence.\n",
+ " BIND(\"##ID##\" AS ?sentenceId)\n",
+ " ?sentence unl:has_id ?sentenceId .\n",
+ " FILTER(NOT EXISTS {\n",
+ " ?featuredInstance a ?featured2 .\n",
+ " ?featured2 rdfs:subClassOf ?featured .\n",
+ " })\n",
+ " FILTER(NOT EXISTS {\n",
+ " ?unfeaturedInstance a ?unfeatured2 .\n",
+ " ?unfeatured2 rdfs:subClassOf ?unfeatured .\n",
+ " })\n",
+ " ?featured rdfs:label ?featuredLabel .\n",
+ " ?unfeatured rdfs:label ?unfeaturedLabel .\n",
+ " ?feature rdfs:label ?featureLabel .\n",
+ "}\n",
+ " } GROUP BY ?sentenceId ?messageTMP\n",
+ "'''\n",
+ "\n",
+ "unfeaturedDomainOrRangeWithRefQuery ='''PREFIX owl: <http://www.w3.org/2002/07/owl#>\n",
+ "PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n",
+ "PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n",
+ "PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>\n",
+ "PREFIX unl: <https://unl.tetras-libre.fr/rdf/schema#>\n",
+ "PREFIX net: <https://unsel.tetras-libre.fr/tenet/semantic-net#>\n",
+ "PREFIX cprm: <https://unsel.tetras-libre.fr/tenet/config/parameters#>\n",
+ "PREFIX req: <https://unsel.tetras-libre.fr/tenet/frame/requirement-ontology#>\n",
+ "PREFIX sys: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/>\n",
+ "PREFIX fprm: <https://unsel.tetras-libre.fr/tenet/frame/parameters#>\n",
+ "\n",
+ "SELECT ?sentenceId (CONCAT('\"', ?unfeaturedLabel, '\" pourrait être précisé par un ou plusieurs attributs parmis : ', ?featureList, '. <br/>(exemples de référence : ', GROUP_CONCAT(?sentence2id ; SEPARATOR=', '), ').') AS ?message) \n",
+ "WHERE {\n",
+ "{SELECT DISTINCT ?sentenceId ?unfeaturedLabel ?sentence2id (GROUP_CONCAT(?featureLabel ; SEPARATOR=', ') AS ?featureList) #\n",
+ "WHERE {\n",
+ " SELECT DISTINCT ?sentenceId ?sentence2id ?unfeaturedLabel ?featureLabel ?otherwiseFeaturedLabel ?featured2label\n",
+ " WHERE {\n",
+ " {\n",
+ " ?p rdfs:subPropertyOf+ sys:Property ;\n",
+ " rdfs:domain ?featured ; \n",
+ " rdfs:range ?unfeatured .\n",
+ " }\n",
+ " UNION\n",
+ " {\n",
+ " ?p rdfs:subPropertyOf+ sys:Property ;\n",
+ " rdfs:domain ?unfeatured ; \n",
+ " rdfs:range ?featured .\n",
+ " }\n",
+ " #?p rdfs:label ?pLabel .\n",
+ " ?featured sys:has_feature ?feature .\n",
+ " FILTER(NOT EXISTS {\n",
+ " ?unfeatured sys:has_feature ?feature\n",
+ " })\n",
+ " ?featuredInstance a ?featured ; sys:from_structure ?sentence.\n",
+ " ?unfeaturedInstance a ?unfeatured ; sys:from_structure ?sentence.\n",
+ " BIND(\"##ID##\" AS ?sentenceId)\n",
+ " ?sentence unl:has_id ?sentenceId .\n",
+ "\n",
+ "\t?otherwiseFeatured rdfs:subClassOf ?unfeatured ; sys:has_feature ?feature2 ; rdfs:label ?otherwiseFeaturedLabel.\n",
+ " ?otherwiseFeaturedInstance a ?otherwiseFeatured ; sys:from_structure ?sentence2.\t\n",
+ "\t?sentence2 unl:has_id ?sentence2id .\n",
+ "\t{?otherwiseFeaturedInstance ?p2 ?featuredInstance2} UNION { ?featuredInstance2 ?p2 ?otherwiseFeaturedInstance}\n",
+ "\t?featuredInstance2 a ?featured2 .\n",
+ "\t?featured2 sys:has_feature ?feature2 ; rdfs:label ?featured2label.\n",
+ "\t\t\n",
+ " FILTER(NOT EXISTS {\n",
+ " ?featuredInstance a ?featured2 .\n",
+ " ?featured2 rdfs:subClassOf ?featured .\n",
+ " })\n",
+ " FILTER(NOT EXISTS {\n",
+ " ?unfeaturedInstance a ?unfeatured2 .\n",
+ " ?unfeatured2 rdfs:subClassOf ?unfeatured .\n",
+ " })\n",
+ " ?featured rdfs:label ?featuredLabel .\n",
+ " ?unfeatured rdfs:label ?unfeaturedLabel .\n",
+ " ?feature rdfs:label ?featureLabel .\n",
+ " }\n",
+ "} GROUP BY ?sentenceId ?unfeaturedLabel ?sentence2id}\n",
+ "} GROUP BY ?sentenceId ?unfeaturedLabel ?featureList\n",
+ "'''\n",
+ "\n",
+ "queryTypeDic = {'error':[possibleClassEquivalenceQuery], \n",
+ " 'warning':[possibleUnderspecificationQuery], \n",
+ " 'info':[unfeaturedDomainOrRangeWithRefQuery]}\n",
+ "\n",
+ "# On charge les factoïdes puis les exigences pour vérification des nouvelles phrases\n",
+ "g = loadFactoids(storeBase)\n",
+ "sparqlUpdate.setQuery('INSERT DATA {'+g.serialize(format='nt')+'}')\n",
+ "sparqlLog = sparqlUpdate.query()\n",
+ "g.serialize(destination='/opt/dashboards/store/extraction2.ttl', format='turtle')\n",
+ "owl2vowl('/opt/dashboards/store/extraction2.ttl')\n",
+ "\n",
+ "g = loadSentences(storeBase)\n",
+ "sparqlUpdate.setQuery('INSERT DATA {'+g.serialize(format='nt')+'}')\n",
+ "sparqlLog = sparqlUpdate.query()\n",
+ "\n",
+ "# Requête de post-traitement pour propager les instances aux sous classes pour chaque phrase\n",
+ "# -> Il faudra sans doute revoir la classe qui accueille les instances à l'extraction\n",
+ "def instToSubclasses():\n",
+ " instToSubclassesQuery = \"\"\"PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n",
+ "PREFIX sys: <https://unsel.tetras-libre.fr/tenet/frame/system-ontology/>\n",
+ "INSERT {?inst a ?subClass .}\n",
+ "WHERE { \n",
+ " ?class rdfs:subClassOf* sys:Structure ; sys:from_structure ?sentence .\n",
+ " ?subClass rdfs:subClassOf+ ?class ; sys:from_structure ?sentence . \n",
+ " ?inst a ?class ; sys:from_structure ?sentence . \n",
+ "}\"\"\"\n",
+ " sparqlUpdate.setQuery(instToSubclassesQuery)\n",
+ " sparqlLog = sparqlUpdate.query()\n",
+ "\n",
+ "instToSubclasses()\n",
+ " \n",
+ "#factoidList = [x.replace('..','/opt/dashboards') for x in glob(storeBase+\"/*/current/*factoid.ttl\")]\n",
+ "#owl2vowl(FRAME_DIR + frame_file, importList=factoidList)\n",
+ "\n",
+ "def createVerificationMessages(directory):\n",
+ " reqId = directory.split('/')[-1]\n",
+ " for messageType in ['error', 'warning', 'info']:\n",
+ " #print(messageType)\n",
+ " messagesStr = ''\n",
+ " for queryTMP in queryTypeDic[messageType] :\n",
+ " query = queryTMP.replace(\"##ID##\",reqId)\n",
+ " sparqlQuery.setQuery(query)\n",
+ " results = sparqlQuery.query().convert()\n",
+ " for result in results[\"results\"][\"bindings\"]:\n",
+ " message = result[\"message\"][\"value\"]\n",
+ " if message not in messagesStr :\n",
+ " #print(\"printing\")\n",
+ " messagesStr+=message+\"\\n\"\n",
+ " outFile = open(directory+'/current/'+reqId+'_'+messageType+'Messages.txt', 'w')\n",
+ " outFile.write(messagesStr)\n",
+ " outFile.close() \n",
+ "\n",
+ "def createOnto(uuidStr): \n",
+ " # -- Initialization (creation of extraction graph)\n",
+ " step = 'init_graph'\n",
+ " dest_file = workDir + uuidStr + '-' + step + \".ttl\"\n",
+ " base_ref = \"http://\" + uuidStr + '/' + step\n",
+ " graph = createTenetGraph(uuidStr)\n",
+ " graph.serialize(destination=dest_file, base=base_ref, format='turtle') \n",
+ " # -- Extraction\n",
+ " graph, _ = applyInferStep(uuidStr, graph, 'preprocessing')\n",
+ " graph, _ = applyInferStep(uuidStr, graph, 'net_extension')\n",
+ " graph, finalInferResult = applyInferStep(uuidStr, graph, 'generation_dga_patch')\n",
+ " # -- Write result \n",
+ " factoidPath = storeBase+uuidStr+'/current/'+uuidStr+'_factoid.ttl'\n",
+ " sentencePath = storeBase+uuidStr+'/current/'+uuidStr+'.ttl'\n",
+ " with open(factoidPath, 'w') as outfile:\n",
+ " outfile.write(finalInferResult)\n",
+ " outfile.close()\n",
+ " # -- Webvowl\n",
+ " owl2vowl(factoidPath)\n",
+ " # -- Verification\n",
+ " factoidGraph = Graph()\n",
+ " factoidGraph.parse(factoidPath)\n",
+ " factoidGraph.parse(sentencePath) \n",
+ " sparqlUpdate.setQuery('INSERT DATA {'+factoidGraph.serialize(format='nt')+'}')\n",
+ " sparqlLog = sparqlUpdate.query()\n",
+ " instToSubclasses()\n",
+ " createVerificationMessages(storeBase+uuidStr)"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "744abdb9-b3d6-4025-abc9-2f749644c3ed",
+ "metadata": {
+ "tags": []
+ },
+ "outputs": [],
+ "source": [
+ "# Fonctions pour la mise à jour globale du corpus (ne pas exécuter en mode \"Tableau de bord\")\n",
+ "\n",
+ "def updateAllFactoids():\n",
+ " dirList = ['/opt/dashboards/store/CCTP-SRSA-IP-20210831/SRSA-IP_STB_PHON_00100']\n",
+ " #dirList = glob('/opt/dashboards/store/CCTP-SRSA-IP-20210831/*')\n",
+ " for directory in dirList:\n",
+ " if directory.split('/')[-1] != '0_NONE':\n",
+ " print(directory)\n",
+ " reqId = directory.split('/')[-1]\n",
+ " createOnto(reqId)\n",
+ "\n",
+ "#updateAllFactoids()\n",
+ " \n",
+ " \n",
+ "def updateAllVerificationMessages():\n",
+ " #dirList = ['/opt/dashboards/store/CCTP-SRSA-IP-20210831/SRSA-IP_STB_PHON_00100']\n",
+ " dirList = glob('/opt/dashboards/store/CCTP-SRSA-IP-20210831/*')\n",
+ " for directory in dirList:\n",
+ " if directory.split('/')[-1] != '0_NONE':\n",
+ " print(directory)\n",
+ " createVerificationMessages(directory) \n",
+ "\n",
+ "#updateAllVerificationMessages()\n",
+ "\n",
+ " \n",
+ "#query = possibleUnderspecificationQuery.replace(\"##ID##\",\"SRSA-IP_STB_PHON_00500\")\n",
+ "\n",
+ "#for r in g.query(query):\n",
+ " #print(r['message'])"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "ca43f1f2-42ef-4355-a2e2-e27351a51b96",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "#######################################################################################################\n",
+ "# Navigateur / éditeur de corpus UNL\n",
+ "#######################################################################################################\n",
+ "\n",
+ "saveButtonClicks = 0\n",
+ "\n",
+ "def main_pane(directory): \n",
+ " saveButtonClicks = 0\n",
+ " saveButton = pn.widgets.Button(name='Enregistrer', button_type='success', width = 100)\n",
+ " saveButtonDic = dict(button=saveButton)\n",
+ " saveCommentButton = pn.widgets.Button(name='Enregistrer', button_type='success', width = 100)\n",
+ " \n",
+ " path = storeBase+directory+'/current/'\n",
+ " pathOrig = storeBase+directory+'/orig/'\n",
+ " svgPath = path+directory+'.svg'\n",
+ " pngPath = path+directory+'.png'\n",
+ " unlPath = path+directory+'.unl'\n",
+ " rdfPath = path+directory+'.ttl'\n",
+ " commentPath = path+directory+'.comments'\n",
+ " with open(commentPath) as commentFile:\n",
+ " commentStr = commentFile.read() \n",
+ " commentFile.close()\n",
+ " with open(unlPath) as unlFile:\n",
+ " unlStr = unlFile.read()\n",
+ " unlFile.close()\n",
+ " svgPathOrig = pathOrig+directory+'.svg'\n",
+ " pngPathOrig = pathOrig+directory+'.png'\n",
+ " unlPathOrig = pathOrig+directory+'.unl'\n",
+ " rdfPathOrig = pathOrig+directory+'.ttl'\n",
+ " with open(unlPathOrig) as unlFileOrig:\n",
+ " unlStrOrig = unlFileOrig.read()\n",
+ " unlFileOrig.close()\n",
+ " unlHtmlOrig = unlStrOrig.replace(\"\\n\",\"<br/>\")\n",
+ " if unlStrOrig == unlStr:\n",
+ " modIndicator = ''\n",
+ " else:\n",
+ " modIndicator = ' <u>modifié</u>'\n",
+ " regexFr = re.compile(\"{org:fr}\\n(.*?)\\n{/org}\",re.MULTILINE|re.DOTALL)\n",
+ " try:\n",
+ " frStr = regexFr.search(unlStr).group(1)\n",
+ " except AttributeError:\n",
+ " frStr = ''\n",
+ " regexEn = re.compile(\"{en}\\n(.*?)\\n{/en}\",re.MULTILINE|re.DOTALL)\n",
+ " try:\n",
+ " enStr = regexEn.search(unlStr).group(1) \n",
+ " except AttributeError:\n",
+ " enStr = ''\n",
+ " \n",
+ " unlOrig_html = pn.pane.HTML(unlHtmlOrig)\n",
+ " unl_input = pn.widgets.input.TextAreaInput(height=400)\n",
+ " unl_input.value = unlStr\n",
+ " comment_input = pn.widgets.input.TextAreaInput(height=300)\n",
+ " comment_input.value = commentStr\n",
+ " \n",
+ " downloadSvg = pn.widgets.FileDownload(sizing_mode='stretch_width', file=svgPath, embed=True, name='Télécharger le graphe en SVG :')\n",
+ " downloadPng = pn.widgets.FileDownload(sizing_mode='stretch_width', file=pngPath, embed=True, name='Télécharger le graphe en PNG :') \n",
+ " downloadRdf = pn.widgets.FileDownload(sizing_mode='stretch_width', file=rdfPath, embed=True, name='Télécharger le code UNL-RDF :')\n",
+ " downloadUnl = pn.widgets.FileDownload(sizing_mode='stretch_width', file=unlPath, embed=True, name='Télécharger le code UNL :')\n",
+ " \n",
+ " def compute_unl_graph_pane(button):\n",
+ " global saveButtonClicks\n",
+ " if saveButtonClicks != 0:\n",
+ " writeUnlFiles(unl_input.value, storeBase+selectDir.value+'/current/'+selectDir.value)\n",
+ " pane = pn.pane.PNG(pngPath, width = pane_width)\n",
+ " saveButtonClicks += 1\n",
+ " return(pane)\n",
+ " \n",
+ " unl_graph_pane = pn.interact(lambda button : compute_unl_graph_pane(button), **saveButtonDic)\n",
+ " \n",
+ " \n",
+ " \n",
+ " warnColumn = pn.Card(width=pane_width, header = \"**Alertes pour l'exigence :**\")\n",
+ " warnings = 0\n",
+ " try: \n",
+ " errorfile = open(storeBase+directory+'/current/'+directory+'_errorMessages.txt','r')\n",
+ " errorlist = errorfile.readlines()\n",
+ " errorfile.close()\n",
+ " for error in errorlist: \n",
+ " warnColumn.append(pn.pane.HTML('<div class=\"alert alert-danger\">{}</div>'.format(error)))\n",
+ " if errorlist != [] : \n",
+ " warnings = 1\n",
+ " except :\n",
+ " pass\n",
+ " try: \n",
+ " warnfile = open(storeBase+directory+'/current/'+directory+'_warningMessages.txt','r')\n",
+ " warnlist = warnfile.readlines()\n",
+ " warnfile.close()\n",
+ " for warn in warnlist: \n",
+ " warnColumn.append(pn.pane.HTML('<div class=\"alert alert-warning\">{}</div>'.format(warn)))\n",
+ " if warnlist != [] : \n",
+ " warnings = 1\n",
+ " except :\n",
+ " pass \n",
+ " try: \n",
+ " infofile = open(storeBase+directory+'/current/'+directory+'_infoMessages.txt','r')\n",
+ " infolist = infofile.readlines()\n",
+ " infofile.close()\n",
+ " for info in infolist: \n",
+ " warnColumn.append(pn.pane.HTML('<div class=\"alert alert-info\">{}</div>'.format(info)))\n",
+ " if infolist != [] : \n",
+ " warnings = 1\n",
+ " except :\n",
+ " pass\n",
+ " if warnings == 0:\n",
+ " warnColumn.append(pn.pane.HTML('<div class=\"alert alert-info\">Pas d\\'anomalie détectée</div>'))\n",
+ " \n",
+ " pane = pn.Column(\n",
+ " pn.Row(\n",
+ " pn.pane.HTML('<a href=\"https://unsel.tetras-lab.io/webvowl#{}_factoid\" target=\"_blank\"><button type=\"button\" class=\"btn btn-outline-secondary btn-sm\">Visualiser l\\'ontologie construite</button><a>'.format(directory)),\n",
+ " pn.Column(pn.pane.HTML('<font size=\"tiny\">Exigence sélectionnée : '+directory+'</font>'), sizing_mode='stretch_width'), \n",
+ " ),\n",
+ " #pn.Card(\n",
+ " # pn.pane.HTML('''<iframe id=\"inlineFrameExample\"\n",
+ " # title=\"Inline Frame Example\"\n",
+ " # width=\"{}\"\n",
+ " # height=\"800\"\n",
+ " # src=\"https://unsel.tetras-lab.io/webvowl/#{}_factoid\">\n",
+ " # </iframe>'''.format(pane_width,selectDir.value)),\n",
+ " # title = \"Visualiser le factoid\", width=pane_width, collapsed=True),\n",
+ " warnColumn,\n",
+ " pn.pane.HTML('FR : '+frStr),\n",
+ " pn.pane.HTML('EN : '+enStr),\n",
+ " unl_graph_pane[1],\n",
+ " pn.Card(pn.Column(saveCommentButton, comment_input, width = pane_width),\n",
+ " header='**Commentaires**', \n",
+ " collapsed=True, width = pane_width), \n",
+ " pn.Card(pn.Column(saveButton, unl_input, width = pane_width),\n",
+ " header='**Code UNL**'+modIndicator, \n",
+ " collapsed=True, width = pane_width),\n",
+ " pn.Card(pn.Column(\n",
+ " unlOrig_html,\n",
+ " pn.Card(pn.pane.PNG(pngPath, width = pane_width-20), header = \"**Graphe d'origine**\", width=pane_width-10)\n",
+ " ), \n",
+ " header=\"**Code UNL d'origine**\", \n",
+ " collapsed=True, width = pane_width),\n",
+ " pn.WidgetBox(\n",
+ " pn.Row(downloadPng, downloadSvg),\n",
+ " pn.Row(downloadUnl, downloadRdf),\n",
+ " width=pane_width,\n",
+ " ),\n",
+ " width=pane_width, \n",
+ " )\n",
+ " \n",
+ " def saveComments(event):\n",
+ " with open(commentPath, 'w') as commentFile:\n",
+ " commentFile.write(comment_input.value) \n",
+ " commentFile.close()\n",
+ " saveCommentButton.on_click(saveComments) \n",
+ " return(pane)\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "5d4ec56e-d0bb-44c8-975b-49d409b6b160",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "#######################################################################################################\n",
+ "# Navigation Interface\n",
+ "#######################################################################################################\n",
+ "\n",
+ "pathList = glob(storeBase+'*')\n",
+ "dirList = sorted([x.split('/')[-1] for x in pathList])\n",
+ "#warningList = sorted(list(errorReqDic.keys())+list(warningReqDic.keys())+list(infoReqDic.keys()))\n",
+ "warningList = []\n",
+ "\n",
+ "dirDic = {}\n",
+ "\n",
+ "for directory in dirList:\n",
+ " if directory in warningList:\n",
+ " dirDic['**'+directory] = directory\n",
+ " else:\n",
+ " dirDic[directory] = directory\n",
+ "\n",
+ "dirDic = dict(sorted(dirDic.items()))\n",
+ " \n",
+ "selectDir = pn.widgets.Select(name='Sélectionnez une exigence : ', options=dirDic, width = 350)\n",
+ "selectDir.value = '0_NONE'\n",
+ "dir_selector = dict(directory=selectDir)#, save=saveButton)\n",
+ "\n",
+ "#######################################################################################################\n",
+ "# Analyse avec UNseL-inter\n",
+ "#######################################################################################################\n",
+ "def extractOnClick(event):\n",
+ " uuidStr = \"COMP\"+str(uuid.uuid4())\n",
+ " createFolderFromUnselInter(uuidStr)\n",
+ " createOnto(uuidStr) \n",
+ " selectDir.options[uuidStr] = uuidStr\n",
+ " selectDir.value = uuidStr\n",
+ "##################################################\n",
+ " \n",
+ "buttonExtract = pn.widgets.Button(name=\"Construire l'ontologie de la phrase (factoïd)\", width=300)\n",
+ "buttonExtract.param.watch(extractOnClick, 'clicks')\n",
+ "\n",
+ "\n",
+ "unlNavigatorPane = pn.interact(lambda directory : main_pane(directory), **dir_selector)\n",
+ "\n",
+ "#unl_graph_pane = pn.interact(lambda button : compute_unl_graph_pane(button), **saveButtonDic)\n",
+ "\n",
+ "# Main interface\n",
+ "pn.Column(\n",
+ "pn.Card( pn.Row(\n",
+ " pn.Spacer(sizing_mode='stretch_width'),\n",
+ " pn.Column(\n",
+ " pn.pane.HTML('''<iframe id=\"inlineFrameExample\"\n",
+ " title=\"Inline Frame Example\"\n",
+ " width=\"1000\"\n",
+ " height=\"600\"\n",
+ " src=\"https://lingwarium.org/UNseL-inter/\">\n",
+ " </iframe>'''),\n",
+ " buttonExtract),\n",
+ " pn.Spacer(sizing_mode='stretch_width'),\n",
+ " ), \n",
+ " title = \"Analyser une nouvelle exigence\", width=pane_width+50, collapsed=True,),\n",
+ " pn.layout.Divider(),\n",
+ " pn.Card( \n",
+ " pn.Row(\n",
+ " pn.layout.HSpacer(),\n",
+ " pn.Column(\n",
+ " selectDir,\n",
+ " unlNavigatorPane[1],\n",
+ " ),\n",
+ " pn.layout.HSpacer(),\n",
+ " ),\n",
+ " title = \"Naviguer dans les exigences\", width=pane_width+50, collapsed=True\n",
+ " ),\n",
+ " pn.layout.Divider(), \n",
+ " pn.Card(\n",
+ " pn.pane.HTML('''<iframe id=\"inlineFrameExample\"\n",
+ " title=\"Inline Frame Example\"\n",
+ " width=\"{}\"\n",
+ " height=\"800\"\n",
+ " src=\"https://unsel.tetras-lab.io/webvowl/#extraction2\">\n",
+ " </iframe>'''.format(pane_width)),\n",
+ " pn.Row(\n",
+ " #pn.pane.HTML('<a href=\"https://unsel.tetras-lab.io/webvowl#extraction\" target=\"_blank\"><button type=\"button\" class=\"btn btn-outline-secondary btn-sm\">Visualiser l\\'ontologie construite pour tout le corpus</button><a>'),\n",
+ " #pn.pane.HTML('<a href=\"https://unsel.tetras-lab.io/static/webvowl_1.1.7/index.html#extraction_SRSA-IP_STB_PHON_00100\" target=\"_blank\"><button type=\"button\" class=\"btn btn-outline-secondary btn-sm\">Visualiser l\\'extraction de SRSA-IP_STB_PHON_00100</button><a>'), \n",
+ " pn.widgets.FileDownload(file='/opt/dashboards/static/extraction.ttl', embed=True)\n",
+ " ), title = \"Résultats sur le corpus\", width=pane_width+50, collapsed=True\n",
+ " ), \n",
+ ")\n"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": null,
+ "id": "e06f5381-6c2d-4762-bcb9-a914fb5889e3",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "#list = glob('/opt/dashboards/store/CCTP-SRSA-IP-20210831/*')\n",
+ "#for d in list : \n",
+ "# print(d)\n",
+ "# uuidStr = d.replace('/opt/dashboards/store/CCTP-SRSA-IP-20210831/','')\n",
+ "# createOnto(uuidStr)"
+ ]
+ }
+ ],
+ "metadata": {
+ "kernelspec": {
+ "display_name": "Python 3 (ipykernel)",
+ "language": "python",
+ "name": "python3"
+ },
+ "language_info": {
+ "codemirror_mode": {
+ "name": "ipython",
+ "version": 3
+ },
+ "file_extension": ".py",
+ "mimetype": "text/x-python",
+ "name": "python",
+ "nbconvert_exporter": "python",
+ "pygments_lexer": "ipython3",
+ "version": "3.8.6"
+ }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}